Gene detail

Detailed information of XP_065651960.1 in Hydra vulgaris

Genomic Location: NC_088923.1:25235782...25274758
NR annotation: XP_047145221.1, hydroxymethylglutaryl-CoA lyase, mitochondrial isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_065795888.1

agttatatattgagtttgttaaaatacataataaagataaaaataaaacatggaaATACTAAATGAAGTGGAGTTAAGGAAAGAGCAGCGAATTAAAGAGAAAATTGAAATGTTAAAGAAAGAGGGGAAAAAACCTGAAGAAATTAAAGCCGAGTTggaaaaagcaaataaaaataagaaaacaaaagaagTAGTGGTATGTAACACTGTTACAGACATACAAAGACGAAAAATTGATAAGTTGATGAGTGATccgACAAAAGAGCCTTACATACCTGAACCAAGAAAAGAGTGGAAGCCAAGAGAACCTGCAGAATTTGTTCGCCATGTTATGGGTTCCAGTGCTGGTGCAGGAAGTGGAGAATTTCATGTGTACCGTGGAATAAGACGGCGTGAAGCAAGAAGAAATGAATATCTTGACAAGAAAGGacttaaaGACGAGTTAgatgaagaatttaaaataaaactgatagaaaatgaagttaaaagcaataaaaatacagagaagaaaagattaaaaagACAGAAGAAAAAACAgaagaaaataatttcaaaaaagctAAAGTTAGTTTCAATTAAAGATGACAAAGAAGGAGAAGAATCAAGTAGTGGAGAAGAAAACAAATCAGaagatgaaaaacattttattattggaGGAAAGTAAAAGTACTATAATGAGTTAGAATGAACCAATCAGAAAGTAGAATTAAATGGTAAATAGTGAAATAAGAGTAAACAATCAATGAGAAAGcaatgtaaacaaaaatgataaaaatgcaaTTGTTTAATGGGAACAAATAAAGAACTGGAAACGAAAATgaactattaaaagaaaaagcgATGGATGGAAAAGATGAGAcaacttaaatgaaaaaaaatACAAACATGGCTCCTGCAcagaaaaacaagttaaagaTAAAGGGAAAACAAACTTTATGTTAACAATAATCCTAAATCAAGTACAAGaaTCAAAAGCAAAGTAAtattgatgaaatttaaaaacaagcttTAGATGGCATCTAATTTTCATTGTTGTATTTTAAGAGAGCAACTAAAATTATTCAGATGCTGGaaacgattttactcaaataaagaTTTCGTAAAAGTAGTTGAGGTTGGCCCTCGTGATGGACTTCaaaatgaaaagGAAATTATCGATACTGATGTTAAGATTCAACTAATTGATAAACTTTCAGAAACAGGCTTGTCTGTTATTGAAGTCACCAGTTTTGTATCCCCAAAATGGGTTCCCCAGATGAGCGATCACAGTGTTGTAATGACcggaattaaaagaaaaagtggTGTTTCTTACCCAGCACTTGTACCCAACATGCAGGGATTTTACTCAGCGGTTAAAGCTGGAGTGAAAGAAATAGCCATTTTTGCTTCTGCATCagaagctttttcaaaaaaaaacatcaactgTACAATTGAAGAAAGTCTGAAACGCTTTGAGCCTGTTTGTAATGCAGCAATAGAGAAAGATATTAAAGTTAGAggatatgtGTCATGTGTAGTAGGTTGTCCCTATGAAGGAATTGTTCAACCAGATGCAGTTTCGAAagtagCTCAGCACTTGATAAAATTAGGATGTTATGAAATATCTCTTGGAGATACAATTGGTATTGGATCACCAgAATCAATTTCTCTTATGCTTTCCTGTGTAAAAGAAGATGTACCTGTTAGCAAACTCGCAATACACTGTCATGATACATATGGAAAAGCCATATCTAACATTGAAGCTGCAATTGAACTTGGCATCAGAGTAGTTGATAGTTCTGTAGGTGGTCTTGGTGGGTGTCCATATGCAAAAGGGGCATCTGGTAATGTTGCTACTGAAGATGTTTTACAGATGCTTCACAATAAGGGAAAGATCActggaGTCGATGTTCTTGCCGTAATTAACATTGCTAAATGGATCAAAACGATTTTGTCTCGTTCGCGTGtccaacaataatttttaaaattgtttatctcgagatatttttattttgtcctaGAAAAACTGCTTTTTTCCTGGTGTACTTCAATATCgcttttgtcaaatttttttaaatttatatttattagtatttatgaataaaaactcaagtatta

Protein

Uniprot

Uniprot term	Description
A8WG57	3-hydroxy-3-methylglutaryl-CoA lyase, cytoplasmic OS=Danio rerio OX=7955 GN=hmgcll1 PE=2 SV=1
Q8JZS7	3-hydroxy-3-methylglutaryl-CoA lyase, cytoplasmic OS=Mus musculus OX=10090 GN=Hmgcll1 PE=2 SV=1
P35915	Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Gallus gallus OX=9031 GN=HMGCL PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00682	HMGL-like	HMGL-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000891	Domain	Pyruvate carboxyltransferase	Interproscan
IPR043594	Family	HMG-CoA lyase	Interproscan
IPR013785	Homologous_superfamily	Aldolase-type TIM barrel	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR42738	HYDROXYMETHYLGLUTARYL-COA LYASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003824	Molecular Function	catalytic activity	Interproscan
GO:0004419	Molecular Function	hydroxymethylglutaryl-CoA lyase activity	Interproscan
GO:0006552	Biological Process	L-leucine catabolic process	Interproscan
GO:0016833	Molecular Function	oxo-acid-lyase activity	Interproscan
GO:0046951	Biological Process	ketone body biosynthetic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K01640	HMGCL, hmgL; hydroxymethylglutaryl-CoA lyase	EC:4.1.3.4	Peroxisome	ko04146	deepkoala