Detailed information of XP_065653359.1 in Hydra vulgaris

Genomic Location: NC_088924.1:8469862...8532798
NR annotation: XP_047125171.1, collagen alpha-6(VI) chain isoform X1 [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
O42163Cochlin OS=Gallus gallus OX=9031 GN=COCH PE=2 SV=1
Q641F3Collagen alpha-1(XXI) chain OS=Xenopus laevis OX=8355 GN=col21a1 PE=2 SV=1
P05555Integrin alpha-M OS=Mus musculus OX=10090 GN=Itgam PE=1 SV=2

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00092VWAvon Willebrand factor type A domainDomainInterproscan
PF02469FasciclinFasciclin domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR036465Homologous_superfamilyvon Willebrand factor A-like domain superfamilyInterproscan
IPR002035Domainvon Willebrand factor, type AInterproscan
IPR036378Homologous_superfamilyFAS1 domain superfamilyInterproscan
IPR000782DomainFAS1 domainInterproscan
IPR050525FamilyExtracellular Matrix Assembly and OrganizationInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24020COLLAGEN ALPHAInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
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 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K06238COL6A; collagen type VI alpha-Glycosaminoglycan binding proteinsko00536deepkoala

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