Genomic Location: NC_088924.1:33559507...33594341
NR annotation: XP_047125290.1, uncharacterized protein LOC100204596 [Hydra vulgaris]
| CDS | |||||
| LOC100204596 | |||||
| Transcript |
| rna-XM_065797966.1 |
| Protein |
| XP_065654038.1 |
| Uniprot term | Description |
|---|---|
| O95628 | CCR4-NOT transcription complex subunit 4 OS=Homo sapiens OX=9606 GN=CNOT4 PE=1 SV=3 |
| Q8BT14 | CCR4-NOT transcription complex subunit 4 OS=Mus musculus OX=10090 GN=Cnot4 PE=1 SV=2 |
| Q09818 | Putative general negative regulator of transcription C16C9.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPAC16C9.04c PE=3 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF14570 | zf-RING_4 | RING/Ubox like zinc-binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR039515 | Domain | NOT4, modified RING finger, HC subclass (C4C4-type) | Interproscan |
| IPR003954 | Domain | RNA recognition motif domain, eukaryote | Interproscan |
| IPR012677 | Homologous_superfamily | Nucleotide-binding alpha-beta plait domain superfamily | Interproscan |
| IPR039780 | Family | CCR4-NOT transcription complex subunit 4 | Interproscan |
| IPR001841 | Domain | Zinc finger, RING-type | Interproscan |
| IPR000504 | Domain | RNA recognition motif domain | Interproscan |
| IPR035979 | Homologous_superfamily | RNA-binding domain superfamily | Interproscan |
| IPR000571 | Domain | Zinc finger, CCCH-type | Interproscan |
| IPR034261 | Domain | CNOT4, RNA recognition motif | Interproscan |
| IPR013083 | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR12603 | CCR4-NOT TRANSCRIPTION COMPLEX RELATED | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003676 | Molecular Function | nucleic acid binding | Interproscan |
| GO:0004842 | Molecular Function | ubiquitin-protein transferase activity | Interproscan |
| GO:0016567 | Biological Process | protein ubiquitination | Interproscan |
| GO:0030014 | Cellular Component | CCR4-NOT complex | Interproscan |
| GO:0003723 | Molecular Function | RNA binding | Interproscan |
| GO:0046872 | Molecular Function | metal ion binding | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K10643 | CNOT4, NOT4, MOT2; CCR4-NOT transcription complex subunit 4 | EC:2.3.2.27 | Ubiquitin system | ko04121 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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