Gene detail

Detailed information of XP_065655746.1 in Hydra vulgaris

Genomic Location: NC_088925.1:24602674...24621740
NR annotation: XP_047138469.1, ATP-dependent RNA helicase DDX4 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_065799674.1

ttctgGACAACCTAAATGAATGAACTCATGGCTTCGTCTGTAATTAACAAGTTAGAAGGTTTAAGTTTGCAAGATCCACCAAATAACATGCAATATACTTATTCTCCATGCAGAAGATATAATTGTTTTgtgtgtttaactaattgtgAGAACTGCAGCAGAGTAAATTGTTCATGCagaataataaagtataaaactaAAGTATCGCGTGTAAAACCACTCTATAATTTTGATGATGatccatttaaaattaaagttggaGGAGTTGGAGATATTTgcgaaataaaatcttttaaagatgCTAACTTACCAGATGTGCTaattgaaaatcttaaaaagctTTTATACCAAATTCCTACACCTGTACAGGTGATCTCAATACCAATATTACTAGCAGGTAAAGATTTACTAGCTCGTGCAGAAACTGGATCAGGAAAAACgGCTGCATTTCTAATACCAATTGTTTCAaccttgattaaaaaaaaaactgttaaaacagCTAGTTCAAAAAATCCATTTGCTgtaattttaactccaacacgAGAATTGGCTTTGCAAATTGAGAGAGAAGCTTTATTGTTGACAGAAAATACTTGTATTAAGGCAATATGTACCTATGGCGGGATAAGCATTAGTAATCAGAAGAAGAAAATTGCAAATGGTTGTGATATACTTATTGGAACCCTTGGGAGAATCCTTTATCTTGCTAAAGAACAAATGctCTCACTAAAAGAACTCAAGGTACTTGTTATTGATGAGGGAGATCATATGTTagataaaaactttgttaaagaTATAGAAAAATTGGTGAATGACTTTGATATGCCTGAAAAGTCTCTACGACAGACTGCTTTGTTTTGTGCAACTCTACCGGCTATTCAAATAATGCACGATCAAAAAGgagctaaaaaaaaactagctttTTTTACTGACACTGTTtgcatgtttttaaatgatacaTACTGTCATGTAGATATTGGTAATAACTTGACCTCACCAAAATCCATAACTCAAAGTTTCTTATTGGTAGATAAACCAGAGttaaagtttcaaatattaGAAAATCAAATTGTTCAAGAATTatcacaaaataataaaactattgttttcaTTGAAACCattaaagaaactataaaaatagcTCAACAACTGTGCATTAAAAATTACCCTGTAACAGTTATTCATGGtcatcGTACTCAAAATGATCGAAAAAGGGCCATCTATGAATTTAATGAAGGTATAAAACCCCTTTTGATATGTACCAATGTTAGTGCGCGTGGCCttgatatttttgaagttaaaacggtaataaattataacttgCCAAATCTAAATCATGATGACATGAGAACATACATATATCGAATTGGGCGTGCAGGTCGTATCGGAAATCCAGGTAAATCTATCTCATTGTTTGTGAAGGGAAAGGATGAAGTATTAGCTCGACCATTGGTTGTTTTATTAGGAGggTCTGAACAAGAAGTACCAATATGGCTGGAAGAGCTTTGCTCAGTGCATGAATTGATCAAGTTGGAAAATTATAAACAAGCAAAGCATGAAACAAAGAATGCTGCTATGTTTGGAGAGAAAAATTCTAGTTTAGATACTAGAAGTtatataaacaAAGGGCAAACAACGGTTAGTCCTTATCGATTATCTGAGTTGATTGCTATCTGAAACATACTTTGTGGAGGTGTAcatagttttatgttttaaaggtttgcgcatatatttaaaagattattacGATAGGTTctctttactttttcttttttttgctaataaattttgtttgcaaATAAACTTGCATTGGAAACCTTTTGTAAATATACTTGCAtctattgactttttttttaattggttaagttttttaggcttttttcttaatttaaatgttgctttaaatcacaaataaaataaataatactccTTCTACTTttgaagactttttaaaaagttacttttttctatttttaattcaaatttatttatttctattcggtatgtaaatacatcttttttttttctttcgcaAATCACAAATAATCACTACTTGTgtttattaaaacttctttttcgataagtttatatttttttggattttaatatttttgtgtgcaagtcaataatttttgtttgtaaatatattcttttttttaa

Protein

Uniprot

Uniprot term	Description
Q3MSQ8	Probable ATP-dependent RNA helicase DDX4 OS=Pelophylax lessonae OX=45623 GN=ddx4 PE=2 SV=1
Q61496	ATP-dependent RNA helicase DDX4 OS=Mus musculus OX=10090 GN=Ddx4 PE=1 SV=2
Q64060	Probable ATP-dependent RNA helicase DDX4 OS=Rattus norvegicus OX=10116 GN=Ddx4 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050079	Family	DEAD box RNA helicase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47959	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0003724	Molecular Function	RNA helicase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12823	DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2	EC:5.6.2.7	Ribosome biogenesis	ko03009	deepkoala