Gene detail

Detailed information of XP_065655906.1 in Hydra vulgaris

Genomic Location: NC_088925.1:30460207...30505553
NR annotation: XP_012555264.2, rab3 GTPase-activating protein catalytic subunit isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC100212168

ATGAAACTTTTATGGAGTTCCCTTGGTATTGCTCTGTCTAACCTTAACTGTCAAACTCCAATATTTATCCAAGTCGGTCCTCGAAATCGATCATTATTTTATGGTTTGTGTATTGGTGAAGGGTTTCGTACTTCATACGAGACCATACATTTAAAATACACTCCACATGAATGTAATCATATTCAAGGAATGATAGAGACATTTCACTCAAAATTGAGTTGTCCAATTCAATCCAATGTGATCATTTCGGTTCGATTTTCATATATTATTAATGACTGGCCAGAAGAGATGTGGTGTCAAGAGCTTCCAAACATTGAAAATGAGTTTGAAATGCAAGTTGGAATTAACTCCTTTGAGGAACTTCCATTTGGTCCTCTTCAAGAACCTGTTATGGATTTAATGCTTGCAGTAACATGGCCTCAATTATCATCTGATATGATAAATGATGATGCTCACTTCAGCGACCTAGATCCTATGCAAGCTCCTCATTGGTCATTAAAAGCACGATTTATGGACTTTTGTCCAACTTTGTTATTTGAGCAATTAAAAGCTCTGTTACATCTTTGCCACCATTCTTCAGGATATAATACTGCTCAAATATTGAGAACTTCTCATCGTAATGATCAAAATAATGAGTTAACATCTGATGTGAGTCATGTCTTGGATCGTCTAACTAAACCTGGTCCTTCTTTATCTCCATTATCAATGGCTGTATCTCGAGCTGCAATGAAGGCTATAAACAGTAATGTTATTGATTCACCGTTGCCAGAAGAGCTTTTAAATAAGGCATTAAATCTTCTGTTTCCTGATGCACACCTAATGAAAGAAGAAGCATGCAAGCTGCAGGCAAGTTTAAGTGAACAACAAAGAAGTTTGGAATCTGATATACAGCGTTTAAAGGACAGATATCGCCATTTAAAAGGTGCACCAACCGATAGTTTAACTTTAACACTTGCTTGCTGTATCATGATATTAAACCATAGTTATGGTGGAATGCAAGCTGTAGCTCATTTATGGCATGAAATTGTGAGAGAGTTGCGATTCAGATATGAGAATAAAATTCTTGTTCCTAAGTTGGCACAGAATCCACCAAACCATAATTATTGCCTTATTCATCAAAAGTTGCAAATGTTAAATTGTTGCATTTTGAAACATCAACAGAGAATATGCTCAGACGAAACTTTGACTAAATCAAATGATCTTATTTCACAAAATAAAAATGAGGTTCAGCACAACACCCCTCAACACACTACTTCTCAATACAACACCCCTCAAAAGCATTCTGTAAGTTACAAAGACTTTTCTCAAAGTAGTTTATCAATCGATAATTCTGTAAAACTTACTCCCCATGAATTTTGTCACAATGCTTTGAATGAGGTTGAATCTGGAAGTAGCGTGTCCCCAGCAACACAACATGGAAGTAGCGTGTCCCCAGCAACACAACATCTTAAATTTCACACATCATCTGAATTGCATGAAAGCGATTCAGATGATGAGTTTTTTGAAGTAGAAGAAAGTTTTGCTAAAGTATCAACTATCTCAAGAAATGAAGTTGAAAACTTTCAGTTTCTCAAACGTGAAGGAGTGTTAAAAGAAACAAATATGAAGCTTCTTGAAACAAATGAAGTTCTTTGTATACCTATTACTCAGGAGAGTTCGCCTTTAACGGAAGATATGTTAAATGAACAGCAGTTGTTGATGGAAAAACTTGGTACCTCTGCAGAAGCATCAAAGTCTAGAGTACGTATGCAATGTGCATCTTTGCTAGCTGATATGGAAGCATTTAAGGCTGCTAATCCAGGCTGTATTTTACCAGACTTTGTTCGCTGGCATTCTCCAAATGACTGGCTTTTGGGACCTGAAACAGATGAGGAAAGAGAAGAACTAAAGAAAATGACAAAAGAAAGAAAAGATGAATATGATAACAAAGAATGGTCAAATAAAGGTCATTTGAGTTTGCGCATGCGTGTTCCTGGTAACACTTGGGAAGAGGTATGGAACACTGCAAAAGCAGTTCCTGCCAGAAAACAAAAAAGACTGTTTGATGATACAAAAGAAGCAGAAAAGGTTCTTCACTTCCTTACAAACCTTACACTTCCTGAAATTCTTCTTTACTTGTTTCCAGTGTTTGTTCAAGCAAGTCTTACTAGGATCTGCAAAGAAGAAGACAGTATTAATTTACACTTGGAAATTGAAAGTTTATTAAAAAAGTCATCTAAGTTACAAGTTGCATCCATCGAAAACTTAAAATTGATGGAGGATATAGTTAATCACATTCATTATGTTGAAATGACAGTTGGAAGAGCTAAGTCATTGCGAATGAAACTATTTTCTGAAGATATTAAAGCTGATTCAATGGAAAGTTTTTTAAAGAAACTTCTAAACAAAGATGAAGTTTTGATCTTAGGGGGTCGCCACTCCCAAATCGGGGGTATTGTTACTAAACTACTTCAACATCAAAAGGAAGAAAATGATTCAATAATGTTTTCGTCTTCAAAAGAAACGAATAGTCGACCACAGACGAACCTTTCGTCTACGCATAAAGATATTCCTTATCCTTTTGGCAGGGAGTATATACTTAGAACAACTGTACCTAGACCGAGTCGGACTTCTAGATTATGCCCACAAAGAATGTACACCGCGATTACTCCTGATGACTTTCGTATGGCTGGCTGTTTTACACAAGACACAAACTTTTTATAA

Transcript

rna-XM_065799834.1

GCATTACATTATTTTGTCAATATGAATAATGGCCGCTGAAAGTGATCaggatccagatgtttttgaaattgatgACTTTACAGCTGCATCAGATTGGGAAAGaTTTATCTATAGAATCGAAGAAATTATTGGACCTCATGGTTGGAAGTtagataaaaatcataaaaagcaaaaactttcaCAGGTGTCTTTAATTACTCAAGCACTttaaaaactaatggATCAGATCTTCATACTCTAGATTTTAAGGAAAACTTACAGTTTAATCATcgtcaattttatttatgttatcatAAAAGTCATGGTGAAATTCAATCTTCTCAAGAAGttttgCTGGAGACTCTCCCTCAAGCTCTTCATGATTCATTTGACTTTAACTTTGATTTCTTATCAAGAGGACATGTTTTAAATCGATGTTTTGGAATTAAGGAGTTTATTGTACTTCTACCAGCATCTAATGAAGCACAAATTGAAGGGGAATCTGAAATGAAACTTTTATGGAGTTCCCTTGGTATTGCTCTGTCTAACCTTAACtgtcaaactCCAATATTTATCCAAGTCGGTCCTCGAAATCGATCATTATTTTATGGTTTGTGTATTGGTGAAGGGTTTCGTACTTCATACGAGAccatacatttaaaatacacTCCACATGAATGTAATCATATTCAAGGAATGATAGAGACATTTCACTCAAAATTgAGTTGTCCAATTCAATCCAATGTGATCATTTCGGTTCGATTTTCATATATTATTAATGACTGGCCAGAAGAGATGTGGTGTCAAGAGCTTCCaaacattgaaaatgagttTGAAATGCAAGTTGGAATTAACTCCTTTGAGGAACTTCCATTTGGTCCTCTTCAAGAACctgttatggATTTAATGCTTGCAGTAACATGGCCTCAATTATCATCTGATATGATAAATGATGATGCTCACTTCAGcGACCTAGATCCTATGCAAGCTCCTCATTGGTCATTAAAAGCACGATTTATGGACTTTTGTCCAACTTTGTTATTTGAGCAATTAAAAGCTCTGTTACATCTTTGCCACCATTCTTCAGGATATAATACTGCTCAAATATTGAGAACTTCTCATCGTAATGATCAAAATaatgAGTTAACATCTGATGTGAGTCATGTCTTGGATCGTCTAACTAAACCTGGTCCTTCTTTATCTCCATTATCAATGGCTGTATCTCGAGCTGCAATGAAGGCTATAAACAGTAATGTTATTGATTCACCGTTGCCAGAAGAGCTTTTAAATAAGGcattaaatctTCTGTTTCCTGATGCACACCTAATGAAAGAAGAAGCATGCAAGCTGCAGGCAAGTTTAAGTGAACAACAAAGAAGTTTGGAATCTGATATACAGCGTTTAAAggaCAGATATCGCCATTTAAAAGGTGCACCAACCGATAGTTTAACTTTAACACTTGCTTGCTGTATCATGATATTAAACCATAGTTATGGTggAATGCAAGCTGTAGCTCATTTATGGCATGAAATTGTGAGAGAGTTGCGATTCAGATATGAGAATAAAATTCTTGTTCCtaaGTTGGCACAGAATCCACCAAACCATAATTATTGCCTTATTCATCAAAAGTTGCAAatgttAAATTGTTGCATTTTGAAACATCAACAGAGAATATGCTCAGACGAAACTTTGACTAAATCAAATGATCttatttcacaaaataaaaatgaggttCAGCACAACACCCCTCAACACACTACTTCTCAATACAACACCCCTCAAAAGCATTCTGTAAGTTACAAAGACTTTTCTCAAAGTAGTTTATCAATCGATAATTCTGTAAAACTTACTCCCCATGAATTTTGTCACAATGCTTTGAATGAGGTTGAATCTGGAAGTAGCGTGTCCCCAGCAACACAACATGGAAGTAGCGTGTCCCCAGCAACACAACATCTTAAATTTCACACATCATCTGAATTGCATGAAAGCGATTCAGATGATGAGTTTTTTGAAGTAGAAGAAAGTTTTGCTAAAGTATCAACTATCTCAAGAAATGAAGTTGAAAACTTTCAGTTTCTCAAACGTGAAGGAGtgttaaaagaaacaaatatgaAGCTTCTTGAAACAAATGAAGTTCTTTGTATACCTATTACTCAGGAGAGTTCGCCTTTAACGGAAGATATGTTAAATGAACAGCAGTTGTTGATGGAAAAACTTGGTACCTCTGCAGAAGCATCAAAGTCTAGAGTACGTATGCAATGTGCATCTTTGCTAGCTGATATGGAAGCATTTaagGCTGCTAATCCAGGCTGTATTTTACCAGACTTTGTTCGCTGGCATTCTCCAAATGACTGGCTTTTGGGACCTGAAACAGATGAGGAAAGAGAAGAACTAAAGAAAATGacaaaagaAAGAAAAGATGAATATGATAACAAAGAAtGGTCAAATAAAGGTCATTTGAGTTTGCGCATGCGTGTTCCTGGTAACACTTGGGAAGAGGTATGGAACACTGCAAAAGCAGTTCCTGCcagaaaacaaaaaagactGTTTGATGATACAAAAGAAGCAGAAAagGTTCTTCACTTCCTTACAAACCTTACACTTCCTGAAATTCTTCTTTACTTGTTTCCAGTGTTTGTTCAAGCAAGTCTTACTAGGATCTGCAAAGAAGaagacAGTATTAATTTACACTTGgaaattgaaagtttattaaaaaagtcatcTAAGTTACAAGTTGCATCCATCGAAAACTTAAAATTGATGGAGGATATAGTTAATCACATTCATTATGTTGAAATGACAGTTGGAAGAGCTAAGTCATTGCGAATGAAACTATTTTCTGAAGATATTAAAGCTGATTCaatggaaagttttttaaagaaacttctaAACAAAGATGAAGTTTTGATCTTAGGGGGTCGCCACTCCCAAATCGGGGGTATTGTTACTAAACTACTTCAACATCAAAAGGAAGAAAATGATTCAATAATGTTTTCGTCTTCAAAAGAAACGaatagtCGACCACAGACGAACCTTTCGTCTACGCATAAAGATATTCCTTATCCTTTTGGCAGGGAGTATATACTTAGAACAACTGTACCTAGACCGAGTCGGACTTCTAGATTATGCCCACAAAGAATGTACACCGCGATTACTCCTGATGACTTTCGTATGGCTGGCTGTTTTACACAAGacacaaactttttataaatgttaaatatacattttGGGTACGCCTTGAAACAACTCGTTATCTAATCTCACCTATACTAGCTGTTAAATTTATCGAatgttaagtttattaaattaataagcataaattaaattaaataaaaaaaatttttaaatatttttatagtatacataaattatgtaaataacgtattatatataaattgttattatagAAAGGTGTATAAAACAACACTAAAACTGCGAGGTTGtattgtcaatataaaaaacttgtGTTCATATAAAACAACTTCGCCA

Protein

Uniprot

Uniprot term	Description
Q642R9	Rab3 GTPase-activating protein catalytic subunit OS=Xenopus laevis OX=8355 GN=rab3gap1 PE=2 SV=1
Q15042	Rab3 GTPase-activating protein catalytic subunit OS=Homo sapiens OX=9606 GN=RAB3GAP1 PE=1 SV=3
Q6NUV0	Rab3 GTPase-activating protein catalytic subunit OS=Danio rerio OX=7955 GN=rab3gap1 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF19533	Rab3-GAP_cat_C	Rab3 GTPase-activating protein catalytic subunit C-terminal	Domain	Interproscan
PF13890	Rab3-GTPase_cat	Rab3 GTPase-activating protein catalytic subunit	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR045700	Family	Rab3GAP catalytic subunit	Interproscan
IPR045698	Domain	Rab3GAP catalytic subunit, C-terminal	Interproscan
IPR026147	Domain	Rab3GAP catalytic subunit, conserved domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21422	RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0043547	Biological Process	positive regulation of GTPase activity	Interproscan