Gene detail

Detailed information of XP_065656211.1 in Hydra vulgaris

Genomic Location: NC_088925.1:40235599...40253874
NR annotation: XP_012556815.1, cytosolic Fe-S cluster assembly factor narfl-like [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_065800139.1

GAGTTTGTGTACTGGAACAATATTCAATACACGGAAACCAGTGCTAAAAACCATATTAACATACAAGAAACTATCAGAAAATTATCTGaagatttagttttaaaacatcaacAGTTGTTATCATTAAGTTCATTTGATTCAGGACCTGGAAGTATATTTTTGCAACATACACCTCAGCAGAACCAAAGTTACTGCTGTggatatttataattttaaattgttttcgtaattctCAATTTATAAGTTACTTAATAATTTGGTATGTTTAAGTTCAGTGGGACTCTTCAGCTTACAGATCTCAATGATTTTATCACTCCATCTCAAGTCTGTATTAAGCCTGTAGAGATAGAAAAGGTGAAGAAAAAAGGTGATACAACTATAAAGATTGAAGGAGATAGTTATTACCAGgtTGATGTAGACAGCGGAGAGCAAGTTCGCTTGAAAAAAGCAAACATAACATTAAATGATTGTTTAGCGTGCAGTGGATGTATTACATCTGCAGAGAGTGTACTTATTGCTGAACAAAGTTGTCTTCAATtagaaaaaGTTCTTGAAGACAATTTATCtttggcaaataaaaaaattgttgtgatTTCTATGTCTCCACAATCTTTAGTTTCTATTGCAGTTAAATTCCATGTTACTGTATCAGATGCCTATTCAAAATTAACTACATTTTTCAAAGATATAGGTTGTGACTATGTATACGATACAAATCTTGCTCGAAGTATATCTTTATTGGAAATGCAGAAAGAGTTTGTAGAAAGgtttaaaagtgataaaaaaatcatgttaacTTCAGCATGTCCTGGCTGGATATGTTACGCTGAAAAGACACACGGAGAGCTCTTAATTCCTTATATCAGTCAAACAAAATCTCCTCAACAAATCATGGGTAGCATTGTAAAGCAGCTATTaggtaaaaagttaaataaaactccTAATGAAATTTATCATGTTACAATTATGCCTTGCTACGATAAAAAACTTGAAGCTTCGCGTACAGActtttataatgatttatataatacGAGAGATGTTGACCTTGTTATTACTTCCTCAGAAGTTGAAATCAtgctacaaacaaaaaatattgatttttgtggTCTTTCTTTATCGTTGATTGATGAAGATTACAGCTTTGTTGATGAACAATATCAATTGTTGAGTCATCGTGGTGGTGGCTCTGGTGGTTATCTGGAACATGTTTTCTTGCATGCTTCGCATTCTTTATTCAATGTTATTCCtgaacaaattatttataaaccacttcgaaataaagattttcaagaAGTTATCCTTGAGATAGATGGTGAAGTCAAGTTGAGATTTGCTTTTGCTTATGGTTTTAGAAACATTCAGTCgattgttcaaaaaataaaacaaaaaaaatgcaattatgaTTTTGTGGAGATTATGGCTTGTCCTTTGGGCTGCTTAAATGGTGGTGGGCAAGTTCGTGCTGAAACTGTAGATGATGCTAAATCGCTTATTCAATTAGTGGCTTCAACTTATGATTTACTAAAACCTGTAAACCCTTTGCATGATAGAAAAACAAGAGAATTATATAATCAACTTTCACAAAGTGATTTGCATACACAGTATCATGCagtcaaaaaaatgaaaacagcgTTAAATATTCAGTGGTGATTACTTGTatcaaattagtttttaattctttgttaCTTCATGTTGGCGTGTCTATGCTTAATATTTTTTCGATTGTGCTGTTATTAAGGTGAAAAATAAATAGTCtaattaaaagcaaattttttatgaattggtTTTCAAGTCCacaattgtatatttattaaagcTAAAGACTTCATAATGTTATGTTTACTTTATAACAAAAGCAGTGTTTTTAATTCTTAGCAGATAAAgttgaacagtttttttttataaaaattgtgagaaaatttaaaaggaCTGTAATATTTCTTCtcaattttgatatattaaaagttatattttgtttgtgtatttaaatatagttgcatttatatatttctCACCTGCATATATAAA

Protein

Uniprot

Uniprot term	Description
A8WH18	Cytosolic Fe-S cluster assembly factor narfl OS=Xenopus tropicalis OX=8364 GN=narfl PE=2 SV=1
Q7TMW6	Cytosolic iron-sulfur assembly component 3 OS=Mus musculus OX=10090 GN=Ciao3 PE=1 SV=2
Q5BK18	Cytosolic iron-sulfur assembly component 3 OS=Rattus norvegicus OX=10116 GN=Ciao3 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02906	Fe_hyd_lg_C	Iron only hydrogenase large subunit, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009016	Homologous_superfamily	Iron hydrogenase	Interproscan
IPR050340	Family	Cytosolic Fe-S Cluster Assembly Factor	Interproscan
IPR004108	Domain	Iron hydrogenase, large subunit, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11615	NITRATE, FORMATE, IRON DEHYDROGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016226	Biological Process	iron-sulfur cluster assembly	Interproscan
GO:0097361	Cellular Component	cytosolic [4Fe-4S] assembly targeting complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K26404	CIAO3; cytosolic iron-sulfur assembly component 3	-	Signaling proteins	-	deepkoala