Gene detail

Detailed information of XP_065656429.1 in Hydra vulgaris

Genomic Location: NC_088925.1:48213604...48217334
NR annotation: KAI8798603.1, polyubiquitin-C [Biomphalaria glabrata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_065800357.1

tttattttaaatacatgatATTTGTTTAGCTATACCATCACATATGATTGTACCAAGACCTCGCAAGCAGTCGGGTAATACCATTCCAATAAATGAAGGCATGCAAATATTTGTGAAAACCCGCACTGGTAGAACCATCACGTTACAGGTTGAACCTGGTGATCCAATTGACAATGTAAAAGCTAAAATTCAAGACAAGGAAAAAATACCAACAGACCAGCAGCGATTAATTTTTGCTGGTGAGCAGTTGGAAGATGGTAAAACATTAGGCGACTACAATGTTCAAAAGGAAGATACCCTTCATCTTGTTCTTCAATTTAGAGGAGGTATATTAATATATGTGAAAACCCTCACTGGTGGAACCATCACGTTGGAGGTTGAACCTGCTGATACAATTGACAATGTAAAAGCTAAAATTCAAGACAAGGAAGGTATACCACCAGACCAGCAGCGATTAACTTTTGCTGGTGAGCAGTTGGAAGATGGTAAAACATTAAGCGACTACAATGTTCAAATGGAAGATACCCTTCATCTTGTTCTTCAATTTAGAGGAGGTATATTAATATATGTGAAAACCCTCACTGGTGGAACCATCACGTTGGAGGTTGAACCTGCTGATACAATTGACAATGTAAAAGCTAAAATTCAAGACAAGGAAGGTATACCACCAGACCAGCAGCGATTAATTTTTGCTGGTAAGCAGTTGGAAGATGGTAAAACATTAAGCGACTACAATGTTCAAATGGCAAGTACCCTTCATCTTGTTCTTCGATTAAGAGCTATACCATCACATATGATTGTACCAAGACCTCGCAAGCAGTCGGGTAATACCATTCCAATAAATGAAGGCATGCAAATATTTGTGAAAACCCGCACTGGTAGAACCATCACGTTACAGGTTGAACCTGCTGATCCAATTGACAATGTAAAAGCTAAAATTCAAGACAAGGAAAAAATACCAACAGACCAGCAGCGATTAATTTTTGCTGGTGAGCAGTTGGAAGATGGTAGAACATTAAGCGACTACAATGTTCAAAAGGAAGATACCCTTCATCTTGTTCTTCAATTTAGAGGAGGTATATTAATATATGTGAAAACCCTCACTGGTGGAACCATCACGTTGGAGGTTGAACCTGCTGATACAATTGACAATGTAAAAGCTAAAATTCAAGACAAGGAAGGTATACCACCAGACCAGCAGCGATTAACTTTTGCTGGTAAGCAGTTGGAAGATGGTAAAACATTAAGCGACTACAATGTTCAAATGGCAAGTACCCTTCATCTTGTTCTTCGATTTAGAGGAGGTATATTAATATATGTGAAAACCCTCACTGGTAAAACCATCACGTTGGAGGTTGAACCTGCTGATACAATTGACAATGTAAAAGCTAAAATTCAAGACAAGGAAGGTATACCACCAGACGAGCAGCGATTAATTTTTGCTGGTAACCTGTTAACAGATTATAGACCATTAAGCGACTACAATATTCAAATGGAAGATACCCTTCATCTTGTTCTTCGATTAAGAGGAGggGATTAAAAGATAGAACATCAGGGAACAGAATGGTTCAAAAATAATACACTCTTCATCTTTACAATCTGTTGCAAAGTATACAATGTATATATGAAAATGCAATACATctatgaaaaataatgtatgcAAGTATATATAAAACCCTGACTGACTGAAAAACTATCACTTGAGAAATCAGTTTTGATAATGCAAAACGCAATGTGAAGACGAAAGAACAAAACAATGAAGGCATCACCAACGAAATGCAATTTCTTGCTAGTAAAGAGTTAAAGTGGCTATTCTTTTTCATGAACTTTGAATAATGgctgaaaaatatttgtatttgtgtaTTTGACTTTTAGAATATGAATGTGAATTTAACTTCGTAAGAGTGTGGACTTAACTTAGTAAGAATGTGTATTTTACTTCGTACGATTGTTTATCTAACTTTGTAATAACTTGTActgaaatttttgtaataatgtaACAACTTGTacttaactttttgtaaataatgtaatcatttgtaattaacttttagtGTATGAATATGTATTTTAGTGTA

Protein

Uniprot

Uniprot term	Description
P0CG68	Polyubiquitin-C OS=Sus scrofa OX=9823 GN=UBC PE=2 SV=1
P0CG66	Polyubiquitin-C OS=Gorilla gorilla gorilla OX=9595 GN=UBC PE=3 SV=1
P62976	Polyubiquitin OS=Cricetulus griseus OX=10029 PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00240	ubiquitin	Ubiquitin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050158	Family	Ubiquitin and ubiquitin-like	Interproscan
IPR019954	Conserved_site	Ubiquitin conserved site	Interproscan
IPR000626	Domain	Ubiquitin-like domain	Interproscan
IPR029071	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR019956	Domain	Ubiquitin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10666	UBIQUITIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0019941	Biological Process	modification-dependent protein catabolic process	Interproscan
GO:0031386	Molecular Function	protein tag activity	Interproscan
GO:0031625	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08770	UBC; ubiquitin C	-	Ubiquitin system	ko04121	deepkoala