Gene detail

Detailed information of XP_065657382.1 in Hydra vulgaris

Genomic Location: NC_088926.1:19882789...19912080
NR annotation: XP_047123539.1, cell cycle checkpoint protein RAD17 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_065801310.1

aaaaatttaaaatttaacagttattgattgattttgagtatgttatttagaaatagaaaattatattgaaaatatttatttaacctgACGGTCTTACAAAAGATGAATGTTACAAAGAATGATGGTTAATAAtaagagaaaatgtGATTGGATATCATCATCATTTGACGAACTTCCAAGTGTTTCTAAAAACACAACAAGGTTAAAACAGAATGATCAGACAGTTCTTGAAGTAACAAAGAAACCTATACTCAgaaGAACAGAAGTCTTTGATCAATGGGTAGAAAAGTATAAGCCTCAAACACTAAGTGATCTTTcagttaatagaaaaaaagtaatagaaGTTGAACAATGGTTGAAGAGTCATTTTAATAGTGATCAAACAAAAGGTGGAGCAGGAATTTTGTTATTAACAGGTCCATCTGGTTCTGGGAAAACAGCTACAATAAATGTTTTAGCAAACCAAATGaaatttgttgtaaaagaaTGGATTAATCCTACCACAAATGAATATCAAGaGCGATCTTTATCTAATTGGCGCGAGTTTCTTGTGAGCCAAGATTCGCAAAGTCAGCAATTTACAGATTTTTTACTTCGAGCAAATAGATACAATCAAGTCGCTATATTTGGTGAtagtaaaaatgaaaacttacaGAGAAAAGTTGTGTTGATTGaagaTTTACCCAACTTTGCTTTACACAAACCAGAGAAATTCCACAACATTTTACgtgAGTATTTGGCAGCTGGGCGATCtccaattattattattatgtcgGATGGTCACAATTCAGAGTCTGTGCATTTAGTACTTCCTAAGCATATTCAAATTATGCTTAACATAAAAGTAATAagtttcaattCTGTTTCAATGACCGCTCTAACAAAAACTATGAATAgtataattgaaaaagaaatgtcttCATCAAACATAACAATTCCATCAAAAGATACTTACTCAATGTTGGCAACAGCAAGCAATGGTGATATACGTTCATGCATCAATTCATTGCAGTTTTTATGCACAAACTgTTTTCTGCCTAAATCtaagaatatagaaaaaaagaattcaaaaggaagaaagcataaaaataaagatggcACCTTAATCAATTGTAAAGATTCctcattgtttttgtttagagCTCTTGGAAAAATACTTTATTGCAAAAggcTTAATGAGGTGGAACGTTTTGCCTTCCAGCTGAATCCAACCCAAAAATCATTAGTTCGAATGGAGTTAAACTTAGACCCAGAGGATGTTTTTATGCGCACTCAGATTACGCCTGAAATGTTTCTTCTTTATGTTCATGAAAATTATCCTGACTTTTTTAATTCAGTAGATGAcattGCATGTGCTAGTGATTACTTGTGTGAATCTGATGTCATGAATGGTTTATGGACTGCTAACTCAGTGATGTGTGATTATTCAGCATCAGTTGGAATACGAGGAGTTATGTTTGCTAATACTCAAATGCAATCGATTACAGGAACAGTTGCTGGTGGTTGGAGACCTCTTCATAAACCTGAGTGGTTCCAAAGATTTAAAacactgCATAGCAGATTGAAATGCTCTGTACAGACAGAGAAAAGATATCCTGCCCAAGAACTTTATACAGAGGTGTTACCATATATGGCCAAATGTGACTCAAATATGCTCCgtTCGTTTGAGCGTGATATTGCTTGTTTTCAAATTTCCCGTCGTCCTCAAAgAATTTCTTTGGGTACCGATCAAGATGATTATAATTATATAGATGAAAACAATGGGGCTTCTAAAACAACTTTTCAACGGTCAGTTGAAACCATTAGTAGTGGTTTACAagaagaagatgaagaaataGAAGATTTTGATGATTGACTTCTCACGAGAAAGAGAACGTTTCTTTCtagaaagtgttttaaaataatatgtaaaaacgttataaaataattttaaaaagtttaaaaataatttaactttcaaaatttttatttaaaaaattatggaaacttaataaa

Protein

Uniprot

Uniprot term	Description
Q9XT62	Cell cycle checkpoint protein RAD17 OS=Chlorocebus aethiops OX=9534 GN=RAD17 PE=1 SV=1
O75943	Cell cycle checkpoint protein RAD17 OS=Homo sapiens OX=9606 GN=RAD17 PE=1 SV=2
Q5R652	Cell cycle checkpoint protein RAD17 OS=Pongo abelii OX=9601 GN=RAD17 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03215	Rad17	Rad17 P-loop domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR004582	Family	Checkpoint protein Rad17/Rad24	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12172	CELL CYCLE CHECKPOINT PROTEIN RAD17	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0000077	Biological Process	DNA damage checkpoint signaling	Interproscan
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0003689	Molecular Function	DNA clamp loader activity	Interproscan
GO:0006281	Biological Process	DNA repair	Interproscan
GO:0033314	Biological Process	mitotic DNA replication checkpoint signaling	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06662	HRAD17, RAD24; cell cycle checkpoint protein	-	DNA repair and recombination proteins	ko03400	deepkoala