Gene detail

Detailed information of XP_065659478.1 in Hydra vulgaris

Genomic Location: NC_088927.1:31254710...31322238
NR annotation: XP_047143186.1, repetitive organellar protein isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC100212967

ATGTCAAGAAAAGGTCGTATTGATCGAAATGATATTGATTCAGTATTGGATGATTTACTTGACAGTGATGTTGAAGACAAGAAGTTACAAGATAAGAATTCAAAATTACCTCAAAAAAAGGTAACAGAAAAACCTAAAGTTTCATTGACATCAAAAACAAGTGATGCAGACTTTTACAAGAACCTAAAAAATTTTGCAAGTAATGAAGATATTAGTAACCATGATGACGAACCACTATCTGAGGAAGGAGTTCAAAAGCTAGCCAATGATATTGGAAACTTAGATGATCTTGATGACAACTTGTTTGCAAATCTCAAGAGCAATGAAAAAAAAAACCAGAAGAAAAAAGCTTACGATTTGAATAATCCGCTTGCAGATTTGGTTTCTGATGATGAATCTTTGAAATTATTTACTAATAAAAAAAAAGAAAAAAGCGAGGCTAATCAAGCTCAACAATCAGATTCAATTTTATCTCCTAGTCATAGTCAAAAAATTTCATCAACCAATGAGACAAAGGCTAAATCAACCAATGAAACAATTACTAAACCAATTGGTTCTCGGAGAAACTCACAAATTACTTTTCCAATTAATGATAATGACATGCCATCAGAAAAAATTGATACTAGTGAAAACAAGGATACTAAGGAAAACAAGTCTCTGTATGAAAAAAAACAACTTGATTCAGCTGTTGGTAATTCTACTAAAAATCTAGGCAGACCTACTACAAAAAAAATTATAAATGATGACATATTTGGAGATGATGAACTTCCAGAAATGAGTGATAAAGAAGTACTAAGCAAACCAGTTAAAAAACAAAGTTCTTCAGAAGATGTCATTCCTTCTGAAAAAGCAACAAAAGCTCTAGATAATTTACTGAATGCTGGCAAAGTTTCAACGCAAAAAAAGAATGCTCCAATGACTATGCTGGAACAAATAATGTCAGGGACCAGAAAAAAAGAAAACGCTGAATCTGAAGAAATATTGTTTGGCAACTACAGTCCTTCTATTGGAAATCAAGGTGAGCGTAACACAACCTCAGCTAATGCCCGCTCTGTTCGTTTTGCATCAGATCTTGGACTAGATGATGAACAGCTGTTTAGTTCAAGTCCTAAATCATTGTCTAATAAAAAGAAGCCATCAAATTTAAAATCATCATCAATAGATCTAAATTCTTCACTTGATAGTTCTATAAATAATGGATTGACTAGATCTAATAAAGCAAGAGAACAGAATATTGTAAATAAGAAAGAAGATACCCAAAAAACTACAAAATCTTCAGATAACTGGTTAGAATTAGGAGATGATTTGACTGATCAGTTTATAGATTCAAGTGATTTTTTACCATCAGCAAAAGAAAATCGTCTTCAAAGAAAAAATAGTTCCAAGTCTTTAGACAATAGACTGGAGTTGGGAGATGAGCTAACTAATCAGTTAGGTGGATTTGATGATTTTTCAACTCGAACAAAAAAAGAAAAACCTTTAAACAAACAAACTAGTAATGAGACAAAAAATAATGACTTTGATAGTTCTTATTTTGATTCATCCAATCAAAAATCAGAAGATTTTGGTTTATCCAATCAAAAATTAGAAGGTTTTGAAGACTCTGGTTCTAAAAATGTTTCTCTTAAAAATAAAATAAATAAAAATGAAAAGCAAGAAGTTTTTTTAGAAGAAAAAGATGACTTTTTGAGTTTATTAAAAAAAAAAAAAATTGAAAAGTCTGCAACTAAACAATCAATTGCAACTCAAGATATTACGGAAAATCTAAGTTTACCAGATATCTCAGAAAAAGCCAAACCTGAAGCACAATTTGAACCAAGCAAAGATAAAGTGCAATATGAAAAAAATATTTCCAACCAATCTAATACAATTGAACCACAAATACAAAATCTTTCTATGCAACAACTTTCTTTGCATCAAAATCAGCCAACTCAGCAACAATTGCTTGAATTAGAAAAGCAACAACAGTACTTTCAATATCTCAACCAACAAAATTCACTTGCACTACTTCAACAGCAACAGTTTCAGCATCAGCAACAAGTTGCACAACAATTGCAGTTTCTTAATACACCTTTCAACCTCACGTCAAATGTTTCACATGAAGCTTTAAAAAATGAAAATGCGAAAAAACTAGCAGCTGAACAATCTTTTTATGAAGTTGTACAAACTATGAAAAATACTTCTGCAATGCAGTCTGAGCTTTCCAAACCCTCATCTGATACAGATTTCAAAAATCTTCAAGATAAATATTTTAAATTAGAAGAAATTAAATCTCAGTCAAATATGGATTTTACTGCAAAAATATATGAGTTGGAAAGCAAAATCAAAAGCTTAGAGTTGGAATGTTCTTTTTTATCATCATCGCAATCAAGCTTGAAACAGCGTCATCAAGATGAGCTGAATGCTTTAGAATCATCTCATAAGATGAGACTAGAGTATGTGGAGGAATCTTATAAACGTCGTGTAAAGCAACTGGAAGATGAAAACAAATTACTGAAAACAAATTACGATGAGAAAATAAATCTTCTTGTAAATGAACATCAAGATCAAATTACCACATTGAAGCAAAAACTTGATTTTAAAGATCAGAATCATTTTTCCGATATAGAGCGATTAAACGAAGTTCATAAAAAGGTCATAACCAACCTAACGCAAGAACATGATGAACGAATTCGACAACTACATGTTATAAAAAAACAAGAAGTGGAAGCAACTGTTAATGCATTTTCGCAGGCCAAATCTTTTCAAGGCTTGGTGGAGGAAGTAAAAAGTTCAACTAAAGAGGTGAGCAATTTACAGGAGAGGTTTTCTACTGATTACCAAGCGCTTCTTCGCGAGCAAGAAATAACTCTTCAAATGCGCAATGAACAGTTAGAAATTGTGTCAAATCGACTTCAACAACGTGAAAAAATAAACGAAGAGGAACGAATCAGGTTGCAAACATTAGTGTCAAGGTTAGAGATTCAGTTGCGTGATCAAACAAGACTTTATGAGCAAGACAAATGGAAGTTAAATCAAGATGAAAATAGGTTAAAGACATTGCAGCATGTTTTTGAAGAAGATCGTCGTATCACAAGCCAACAACTGCAAGAAGAACGGACTCAGATTGCAAAGGCTAAAGAAGAAATGCTAGCTGAACAGAGAAAGTTAATTGTGGAATGTTATGAAGAAAAAAGACTTCTAAATGAAGAAAAATTGGCATTGTTAGCGCTTCAACGTGAAGTTGTAGATGCAAATAAAAACGATCGCCGTTCAATTATACAGGCTGAAACTGACTTTGAATTGATGGCGGCCCGTCAAAAACACGATTCTTCAACTTTTAACATTCGTTTAGCGCATGTGCAACAAGAAGAAGCTCGCTTGGCACTTGAGAAAAGTGAGTTTCTCAAACATGAACAATCAATTTCCAGTGAACAAGAGAGGTTGCGCGAAATAGGTCGTGTGTTGCATGAAAAATCTAAAGAAGTTGAAGACTTCGCAAAGGAAGCAAAACAAATGTACGATGAAAGTGTTAAATCTAGTGAGCAAACTAGCGCTTTTCGATCTTATTTGGAAAATCTTAAGAACGAACTTGAGGTCAGAGCTATATCTCTTGAACAAAAAGAAGCAGAATTATTTCAGCATCAAGAAAATCTGGAAGAGCTTCGAAGAAAAGCCGCGGAAGCGAGCCAACGTATGACCTGTCTTCAATGTAAAGGATTTCTTGCTCCATGTAATACAAGTATTACAGGAGTTCCTTCAAGATCGCAATCTTATTTTGGTAAAAGAGGAAATGATTCTATAGAAGTTACAGCCTCAAAAGCCATTTTAACGAGCACGCCTGATTTAGGCGCTGACATGAATCGAAATTTTAATAACTATAAATCTCAAACGTGTAATCTTAATGAACACGTGAAAGCTCCGAATAAATTTATGTATTTAGATAATGTTGAAGGTTTCAGCGTGTTCCAGCAAAATGGAAACTCGATCGGTACTTCCAAATCATTTCAAGGAGTTCCAATAGCAAAAATTAAACCCCCAGATTTACTTTTAAATGATTTAGAATTTAGAAGTCACTTACGTAGATGGGACTCTGCTAAAGGCAGAGATGACGACTTTATTGAAGAAGAGACTAAATTTTTAGAAACGCTTAGTCAAAATAGATAG

Transcript

rna-XM_065803406.1

aaataatttgaaaatccACTAACATTACCTCGATAACGTCCGAAAAAAATGACAACAAAAATGGTGGAATCATAAAATGAGCAAATGTAATATTCTTTTGTCtaattgtaacaaaaatgtTACTTGAAGATGTCAAGAAAAGgtcGTATTGATCGAAATGATATTGATTCAGTATTGGATGATTTACTTGACAGTGATGTTGAAGacaAGAAGTTACAAGATAAGAATTCAAAATTACctcaaaaaaaggtaacaGAAAAACCTAAAGTTTCATTGACATcaaaAACAAGTGATGCAGACTTTTACAAGAACCTAAAAAATTTTGCAAGTAATGAAGATATTAGTAACcATGATGACGAACCACTATCTGAGGAAGGAGTTCAAAAGCTAGCCAATGATATTGGaAACTTAGATGATCTTGATGACAACTTGTTTGCAAATCTCAAgagcaatgaaaaaaaaaaccagaagaaaaaagcTTACGATTTGAATAATCCGCTTGCAGATTTGGTTTCTGATGATGAATCtttgaaattatttactaataaaaaaaaagaaaaaagcgaGGCTAATCAAGCTCAACAATCAGATTCAATTTTATCTCCTAGTCATagtcaaaaaatttcatcaacCAATGAGACAAAGGCTAAATCAACCAATGAAACAATTACTAAACCAATTGGTTCTCGGAGAAACTCACAAATTACTTTTCCAATTAATGATAATGACATGCCATCAGAAAAAATTGATACTAGTGAAAACAAGGATACTAAGGAAAACAAGTCTctgtatgaaaaaaaacaacttgattCAGCTGTTGGTAATTCTACTAAAAATCTAGGCAGAcctactacaaaaaaaattataaatgatgaCATATTTGGAGATGATGAACTTCCAgAAATGAGTGATAAAGAAGTACTAAGCAAAccagttaaaaaacaaagttcttCAGAAGATGTCATTCCTTCTGAAAAAGCAACAAAAGCTCTAGATAATTTACTGAATGCTGGCAAAGTTTCAACGCAAAAAAAGAATGCTCCAATGACTATGCTGGAACAAATAATGTCAGGGaccagaaaaaaagaaaacgctGaATCTGAAGAAATATTGTTTGGCAACTACAGTCCTTCTATTGGAAATCAAGGTGAGCGTAACACAACCTCAGCTAATGCCCGCTCTGTTCGTTTTGCATCAGATCTTGGACTAGATGATGAACAGCTGTTTAGTTCAAGTCCTAAATCATTGTCTAATAAAAAGAAGccatcaaatttaaaatcatcATCAATAGATCTAAATTCTTCACTTGATAGTTCTATAAATAATGGATTGACTAGATCTAATAAAGCAAGAGAACAGaatattgtaaataagaaagAAGATACCCAAAAAACTACAAAATCTTCAGATAACTGGTTAGAATTAGGAGATGATTTGACTGATCAGTTTATAGATTCAAGTGATTTTTTACCATCAGCAAAAGAAAATCgtcttcaaagaaaaaatagttcCAAGTCTTTAGACAATAGACTGGAGTTGGGAGATGAGCTAACTAATCAGTTAGGTGGATTTGATGATTTTTCAACTcgaacaaaaaaagaaaaacctttaaacaaacaaactagTAATGagacaaaaaataatgactttgatagttctTATTTTGATTCATCCAATcaaaaatcagaagattttggtttatccaatcaaaaattAGAAGGTTTTGAAGACTCTGGTTCTAAAAATGtttctcttaaaaataaaataaataaaaatgaaaagcaagaagtttttttagaagaaaaagatgactttttgagtttattaaaaaaaaaaaaaattgaaaagtctGCAACTAAACAATCAATTGCAACTCAAGATATTACGGAAAATCTAAGTTTACCAGATATCTCAGAAAAAGCCAAACCTGAAGCACAATTTGAACCAAGCAAAGATAAAGtgcaatatgaaaaaaatatttccaaccAATCTAATACAATTGAACCACAAATACAAAATCTTTCTATGCAACAACTTTCTTTGCATCAAAATCAGCCAACTCAGCAACAATTGCTTGAATTAGAAAAGCAACAACAGTACTTTCAATATCTCAACCAACAAAATTCACTTGCACTACTTCAACAGCAACAGTTTCAGCATCAGCAACAAGTTGCACAACAATTGCAGTTTCTTAATACACCTTTCAACCTCACGTCAAATGTTTCACatgaagctttaaaaaatgaaaatgcgAAAAAAcTAGCAGCTGAACAATCTTTTTATGAAGTTGTACAAACTATGAAAAATACTTCTGCAATGCAGTCTGAGCTTTCCAAACCCTCATCTGATACAGATTTCAAAAATCttcaagataaatattttaaattagaagaaatTAAATCTCAGTCAAATATGGATTTTACTGCAAAAATATATGAGTTGGAAAGCAAAATCAAAAGCTTAGAGTTGGAATGTTCTTTTTTATCATCATCGCAATCAAGCTTGAAACAGCGTCATCAAGATGAGCTGAATGCTTTAGAATCATCTCATAagATGAGACTAGAGTATGTGGAGGAATCTTATAAACGTCGTGTAAAGCAACTGGAAGATGAAAACAAATTACTGAAAACAAATTACGATGAGAAAATAAATCTTCTTGTAAATGAACATCAAGATCAAATTACCACATTGAAgcaaaaacttgattttaaagATCAGAATCATTTTTCCGATATAGAGCGATTAAACGAAGTTCATAAAAAGgTCATAACCAACCTAACGCAAGAACATGATGAACGAATTCGACAACtacatgttataaaaaaacaagaagtgGAAGCAACTGTTAATGCATTTTCGCAGGCCAAATCTTTTCAAGGCTTGGTGGAGGAAGTAAAAAGTTCAACTAAAGAGGTGAGCAATTTACAGGAGAGGTTTTCTACTGATTACCAAGCGCTTCTTCGCGAGCAAGAAATAACTCTTCAAATGCGCAATGAACAGTTAGAAATTGTGTCAAATCGACTTCAACAACGTGAAAAAATAAACGAAGAGGAACGAATCAGGTTGCAAACATTAGTGTCAAGGTTAGAGATTCAGTTGCGTGATCAAACAAGACTTTATGAGCAAGACAAATGGAAGTTAAATCAAGATGAAAATAGGTTAAAGACATTGCAGCATGTTTTTGAAGAAGATCGTCGTATCACAAGCCAACAACTGCAAGAAGAACGGACTCAGATTGCAAAGGCTAAAGAAGAAATGCTAGCTGAACAGAGAAAGTTAATTGTGGAATGTTATGAAGAAAAAAGACTtctaaatgaagaaaaattggCATTGTTAGCGCTTCAACGTGAAGTTGTAGATGCAAATAAAAACGATCGCCGTTCAATTATACAGGCTGAAACTGACTTTGAATTGATGGCGGCCCGTCAAAAACACGATTCTTCAACTTTTAACATTCGTTTAGCGCATGTGCAACAAGAAGAAGCTCGCTTGGCACTTGAGAAAAGTGAGTTTCTCAAACATGAACAATCAATTTCCAGTGAACAAGAGAGGTTGCGCGAAATAGGTCGTGTGTTGCATGAAAAATCTAAAGAAGTTGAAGACTTCGCAAAGGAAGCAAAACAAATGTACGATGAAAGTGTTAAATCTAGTGAGCAAACTAGCGCTTTTCGATCTTATTTGGAAAATCTTAAGAACGAACTTGAGGTCAGAGCTATATCTCTTGAACAAAAAGAAGCAGAATTATTTCAGCATCAAGAAAATCTGGAAGAGCTTCGAAGAAAAGCCGCGGAAGCGAGCCAACGTATGACCTGTCTTCAATGTAAAGGATTTCTTGCTCCATGTAATACAAGTATTACAGGAGTTCCTTCAAGATCGCAATCTTATTTTGGTAAAAGAGGAAATGATTCTATAGAAGTTACAGCCTCAAAAGCCATTTTAACGAGCACGCCTGATTTAGGCGCTGACATGAATcgaaattttaataactataaatcTCAAACGTGTAATCTTAATGAACACGTGAAAGCTCcgaataaatttatgtatttagaTAATGTTGAAGGTTTCAGCGTGTTCCAGCAAAATGGAAACTCGATCGGTACTTCCAAATCATTTCAAGGAGTTCCAATAGCAAAAATTAAACCCCcagatttacttttaaatgatttagAATTTAGAAGTCACTTACGTAGATGGGACTCTGCTAAAGGCAGAGATGACGACTTTATTGAAGAAGAGACTAAATTTTTAGAAACGCTTAGTCAAAATAGatagtatatatttatgaaatgcaattatttatacatacaaaaatttcataaaaatttctttcCAACATTTACTAAGATCGGGGTTGACGTCACAAAGTCCACAAAAACTAACTAAAATCTGGGTAGACGTCATATAATGAACTTAAAATCAACTAGTCAACTAAAATCTTAGtcttttcattaaaatcaatCTACTTTGAGTCAATTTTACTGAAAAAGGggtattagtttttataaaacgttATGCCTCGGCATGTAAACCCACGGTGCTACTTATGACAACGatgtaaaagaaattatataaactg

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21007	FBF1	Fas-binding factor 1	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033561	Family	Fas-binding factor 1	Interproscan
IPR049390	Domain	Fas-binding factor 1, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33689	FAS-BINDING FACTOR 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005814	Cellular Component	centriole	Interproscan
GO:0036064	Cellular Component	ciliary basal body	Interproscan
GO:0060271	Biological Process	cilium assembly	Interproscan
GO:0090162	Biological Process	establishment of epithelial cell polarity	Interproscan
GO:0097539	Cellular Component	ciliary transition fiber	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K16471	FBF1, ALB; Fas-binding factor 1	-	Cilium and associated proteins	ko03037	deepkoala