Gene detail

Detailed information of XP_065659902.1 in Hydra vulgaris

Genomic Location: NC_088927.1:46971817...47000876
NR annotation: XP_047142794.1, WD repeat-containing protein 13 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_065803830.1

attgttaatcaaaaaagtattttatttaagtaaacatataaaaaaataaatcattgttGTCTTGATGTGGTTGGTTTATAATCTTTGTCAATACTGTGCTTACTTCGATGAATATTGCTCAGCATATTTTGGCTTTTGATGTTAGATATAGCAACTACAGGACAAATACTGATCCTCAACACCgaaCTTTGTACATAAGACGTCGTTCACAACTATTAAGAGATCTCGCTAAGAAAgatcATGATACATCAATCAGAAGAAATTATTTGCAGATTCGTAAGCAACTATTAGCCAAGAAATATGGATCAATACCTGTAACAGAAAGTCTgaaGTCATTTAGTGTGAAGAGTCACAGTTCAATTGAgACTAAAATTGAACTAAACAACCTTGAGATCCCTCGTGATGTAATTCGATTGAGCCATAAATATAGAAGTGAATCATACAAACATAAAGGAAGCATTGGCTcactaaaaatgatttttatgtcAGAGACTATTCCTGATGAGTTGATAGACATTGAAAATGAAGGTGTTGTACCTACAAATAAAGCATCTGCTAGCAGagcaaTGGGCGGGAATACCACGTTAAGTGAAAATTATGCATTCTCAGGAATGTTTCATATATTTGACCAGCATGCAGATGCAGttaatggtgttaaatttgcaaataatgaCAAATTCTTGTTTGCCTGTTGTTCAAAAGATTCAACATTATCGGTTTGCTCGTTAGAAGTGCATCCTCCTCGAGTTAAATCCATACTTCATGGTCATAAAGGTGCTGtcaatgattttgattgGTCCAGTACTAATGATTTGCTTGTGTCAGCATCTGATGATTGCACAGCTCAGATCTGGAATGCCAGCAGTGGTCAAAATATTCGAACTATAAAAGATCATTTTGAAACACCTGTTAATTGTTGTCGTTTTATGCCTCTTAATAACAATCTTGTTGTTACTGGTAATGAAAAAGGTCATGTTCAAGTTTTTAATACATCAACTGGTATGTATGCTAAAGATGGAGTTGTTAAAGGACATACTGCTATTAAATGTATGGCATTTGACCCTACTGGTACTTTACTGTGGACTGGTGATGAGAAGggTGCTATTGTATCTTTCATGTTTAATATAGTTGAAGGAAAATTGGTAAGGGGGAAAAGATTTGTGATACCGCAATGTGGTTTCATAACCTCAATTTGTGCTCGTACTTGGGTCAGTAGGGAGGCTCGTGCTCCATCTTTATTAGTTAACTGTTTAACAAATCGCTGCATGTTATTAAgcatttgTGATTCTACTGGGGAGATACAGCAAAAAGcttgttttccaataaaactagaaaaagaaaaaattcgaAGTTCATTCTGCCCACTAATGTCTTTTCGCCAAGGAGCTTGCATAGtTACAGGCAGTGAAGATACCTCTgtgtacttttttaatattgatgaaCCTTTGAAACCAATTAATACATTGTTGGGTCACTCGGCACCTGTACTTGATGTTTGCTGGAACTATGATGAAAGTTTATTAGCTTCTTGTGATGCAGAGGGTACTGTGATTATATGGAAACGTGTCCATTAAAATGGCGATTGAGAATGAAATCTTTGATGTGCACATTTTGggtgcattttataaaaatgaaattaggtcaatttaaatatttgtgattaaattatttttatgttttgtgatttttttattgttattgtatcgTTTGGAATAGACCTTCAtggattttcttttaaaacggGATGGCTTGTTTGAACAGCGTGCTACAAGCATCattttgttaactaaatatagATGCATTTAACTCGTTGTTATTTATGTACTTAAACCAAGTTGCCTAGTGCAATTAAAAGGTAGTTTTATTATAGCTTTATGATTCAAACTAGTTACAAGAAAATagtatcttttatttaaagcgTTATTTATAACTGCTTATCTAAAGCTATAAATGCAATTTCTTAGAAATTCAATGTAAGTATAGAATTCTATATAAATACTgctttgttaataatttatgccaataaattttttttagggtgTTTTAAATTgtgtatagtttttttaaaagtatttttgaaattaagttataaaaacggaatgtaaaataatattttaaaaatatatagtgaaataAAA

Protein

Uniprot

Uniprot term	Description
Q9H1Z4	WD repeat-containing protein 13 OS=Homo sapiens OX=9606 GN=WDR13 PE=1 SV=3
Q6DKP5	WD repeat-containing protein 13 OS=Pan troglodytes OX=9598 GN=WDR13 PE=3 SV=1
Q5RF24	WD repeat-containing protein 13 OS=Pongo abelii OX=9601 GN=WDR13 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR051350	Family	WD repeat-containing signal transduction regulator	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22838	WD REPEAT PROTEIN 26-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:1990841	Molecular Function	promoter-specific chromatin binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K24739	WDR13; WD repeat-containing protein 13	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala