Gene detail

Detailed information of XP_065660121.1 in Hydra vulgaris

Genomic Location: NC_088927.1:59428842...59444713
NR annotation: XP_002164829.1, ATP-dependent RNA helicase dbp2 isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC100213598

ATGTATGATTCTTTACCTACATCGTTTGGAGGAAACAGAAGATATGATAATCGTGATAGCAGAAGAGGAGGTGGTGGTGGTCGAGGTGGCGGAGGAGATCATGGCGTTGGGGCACAAGGTGGTTTTAACAAAGAGTATACTGTGCCTGGTTCAAGTCTCCGAAAGCCTCGGTGGGATTTAAATTCATTACCAAGATTTGAAAAAAACTTTTACAGAGAACATCCAGCTGTTCAAAGTCGTTCTCTGGAAGAAGTTGATATGTTTCGAAAAACTCGAGAGATTTCTGTAGTTGGAAGAAATATACCAAAGCCCTGCCAAAGTTTTGATGAGCTTTGTATTCCAGATTATGTTGGCGATGCACTTCGTAAATTCAATTTCAAAGAGCCAACTGCTATTCAATCTCAAGGGTTTTCGGTTGCTCTTTCTGGAAGAAACATGGTTGGTATTGCACAAACTGGTAGTGGAAAAACGATATCTTTTGTTCTTCCTGCTGTAATACATATAAATAATCAACCTCCATTAAACCAAGGCGATGGTCCTATTTGTTTAGTTCTTTGCCCTACTCGAGAGTTGGCCATACAAGTCCAGAGCGTTGCCGGACAATTTGGATTAACTACTAGAGTAAGAAGTACATGTATTTATGGAGGAGCATCAAAAGGACCTCAGATAAGAGATTTAGAAAGAGGTTCAGAAATTGTTGTTGCAACTCCTGGAAGATTAATTGACTTAATCGAAATAAGAAAAATTAGTTTAAAACGAGTGACATATTTAGTATTAGATGAAGCTGATAGAATGTTAGATATGGGTTTTGAGCCGCAAATACGAAAAATTATAGATCAAATACGTCCTGATCGTCAGGTGCTTATGTGGTCAGCTACATGGCCAAAAGAAGTTCGAAAACTTGCAGAGGATTTTTTAACTGACTATATACAAATAAATATTGGTTCTTCAGACATTCATGCTAATCATAATATATTACAAATTGTTGATGTATGTGAAGAATATGAAAAGGATAGAAAACTTGTTAAATTACTTGAAGAAATAATGGGAGAAAAAGAGAATAAAACAATTATATTTTGTGAGACAAAACGCAAAACAGACGACATAACTCGAAGATTAAGAAAAGATGGATGGCCTGCAATGTGTATACATGGAGATAAATCTCAACCAGAGCGAGAATGGGTTTTAAAAGAATTTCGTAGTGGAAAAGCTCCGATTCTAATTGCTACTGATGTAGCCTCGCGAGGATTGGATATTCCGGACATAAACTTTGTTGTCAACTATGATTACCCTAATAGTGGTGAAGATTATATCCATCGAATTGGCAGAACTGCGCGTGCTGGAAACACAGGTACAGCATATACTTTTTTCACTAGTGCAAACGGAAAATATGCAGCTGAACTCTTAAAAGTCATGGAGGAAGCAAATCAAACAATTCCACCTAAGTTAGCGGAGCTCGGAGGTCGTCTTTATAATGGACGCAAGAGAATGCGTTACAGTTCTGAAAGTGACGACAAGGGTCCTGGGGTGAAACGTCCTCCAGTAAATAATGGTGGTTACAATAATAATACTAATGGTGGTCCTCGAAATAGTGCTCCGCCACCGCCGAGAGGACGCCCTCCTGTTCATATGGCATCAAGAGGTGGTCACAATGCATCATATTCTGGTGGTCGAGGAGGAAGTGATAGTTACAATAGAAATCAAGGTAGTGGAGGCGAGTATATTAATGGGGGAGGTAATCAGCAAAATGGGTGGTCTAGTAATGGTGCCAATCAAGGAAATTGGAATCATAATCAGCCACACAGAGAAAACCACCAAGCAAATTGGGCAGGCAATCACCAACCGCCGCAACAACCTCCGTCTCAACAAACTGCATGGAATCAGCAACAGCCACCTCAACAGCAACAACAACCACCACAACAAACTTCGCAACAGCAATGGGCCCAATATCAGCAACAAATGCAGGAATGGCAGCAAAAAAATCAACAATGGCAGCAGTGGCAACAGTCCCAAGGATCTACTTCGAACTAA

Transcript

rna-XM_065804049.1

AAAGGACTGGAATCAAGTTGTTACCCAGAATTCAGCGGTCACATTTTGCTTAGGAGTTTCTTTTCTGTGTCGTTTTGCGAAAACTCGCAAATAAGTTTTTCtgatttaatacatttattcaAGGATTTGTCAAAGTATGTATGATTCTTTACCTACATCGTTTGGAGGAAACAGAAGATATGATAATCGTGATAGCAGAAGAGGAGGTGGTGGTGGTCGAGGTGGCGGAGGAGATCATGGCGTTGGGGCACAAGGTGGTTTTAACAAAGAGTATACTGTGCCTGGTTCAAGTCTCCGAAAGCCTCGGTGGGATTTAAATTCATTACcaagatttgaaaaaaacttttacagaGAACATCCAGCTGTTCAAAGTCGTTCTCTGGAAGAAGTTGATATGTTTCGAAAAACTCGAGAGATTTCTGTAGTTGGAAGAAATATACCAAAGCCCTGCCAAAGTTTTGATGAGCTTTGTATTCcagattatgtTGGCGATGCACTTCGTAAATTCAATTTCAAAGAGCCAACTGCTATTCAATCTCAAGGGTTTTCGGTTGCTCTTTCTGGAAGAAACATGGTTGGTATTGCACAAACTGGTAGTGGAAAAACGATATCTtttgttctTCCTGCtgtaatacatataaataatcAACCTCCATTAAACCAAGGCGATGGTCCTATTTGTTTAGTTCTTTGCCCTACTCGAGAGTTGGCCATACAAGTCCAGAGCGTTGCCGGACAATTTGGATTAACTACTAGAGTAAGAAGTACATGTATTTATGGAGGAGCATCAAAAGGACCTCAGATAAGAGATTTAGAAAGAGGTTCAGAAATTGTTGTTGCAACTCCTGGAAGATTAATTGACTTAAtcgaaataagaaaaattagtttaaaacgaGTGACATATTTAGTATTAGATGAAGCTGATAGAATGTTAGATATGGGTTTTGAGCCGCAAATACGAAAAATTATAGATCAAATACGTCCTGATCGTCAGGTGCTTATGTGGTCAGCTACATGGCCAAAAGAAGTTCGAAAACTTGCAGAGGATTTTTTAACTGactatatacaaataaatattggtTCTTCAGACATTCATGCTAATcataatatattacaaattgTTGATGTATGTGAAGAATATGAAAAGGATAGAAAACTTGTTAAATTACTTGAAGAAATAATGGGAGAAAAAgagaataaaacaattatattttgtgAGACAAAACGCAAAACAGACGACATAACTCGAAGATTAAGAAAAGATGGATGGCCTGCAATGTGTATACATGGAGATAAATCTCAACCAGAGCGAGAATgggttttaaaagaatttcgTAGTGGAAAAGCTCCGATTCTAATTGCTACTGATGTAGCCTCGCGAGGATTGGataTTCCGGACATAAACTTTGTTGTCAACTATGATTACCCTAATAGTGGTGAAGATTATATCCATCGAATTGGCAGAACTGCGCGTGCTGGAAACACAGGTACAGCATATACTTTTTTCACTAGTGCAAACGGAAAATATGCAGCTGAACTCTTAAAAGTCATGGAGGAAGCAAATCAAACAATTCCACCTAAGTTAGCGGAGCTCGGAGGTCGTCTTTATAATGGACGCAAGAGAATGCGTTACAGTTCTGAAAGTGACGACAAGGGTCCTGGGGTGAAACGTCCTCCAGTAAATAATGGTGGttacaataataatactaatgGTGGTCCTCGAAATAGTGCTCCGCCACCGCCGAGAGGACGCCCTCCTGTTCATATGGCATCAAGAGGTGGTCACAATGCATCATATTCTGGTGGTCGAGGAGGAAGTGATAGTTACAATAGAAATCAAGGTAGTGGAGGCGAGTATATTAATGGGGGAGGTAATCAGCAAAATGGGTGGTCTAGTAATGGTGCCAATCAAGGAAATTGGAATCATAATCAGCCACACAGAGAAAACCACCAAGCAAATTGGGCAGGCAATCACCAACCGCCGCAACAACCTCCGTCTCAACAAACTGCATGGAATCAGCAACAGCCACctcaacagcaacaacaaccaCCACAACAAACTTCGCAACAGCAATGGGCCCAATATCAGCAACAAATGCAGGAATGGcagcaaaaaaatcaacaatggCAGCAGTGGCAACAGTCCCAAGGATCTACTTCGaactaacttttgttttaaatatccaCTCGACGTTGCGAAtcttatttaagtaaaaagtcGCTTTTCGGATCTGtaacttataaattattactgatatataatttaataaa

Protein

Uniprot

Uniprot term	Description
Q501J6	Probable ATP-dependent RNA helicase DDX17 OS=Mus musculus OX=10090 GN=Ddx17 PE=1 SV=1
Q92841	Probable ATP-dependent RNA helicase DDX17 OS=Homo sapiens OX=9606 GN=DDX17 PE=1 SV=2
Q61656	Probable ATP-dependent RNA helicase DDX5 OS=Mus musculus OX=10090 GN=Ddx5 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014014	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003724	Molecular Function	RNA helicase activity	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0000380	Biological Process	alternative mRNA splicing, via spliceosome	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003730	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0043021	Molecular Function	ribonucleoprotein complex binding	Interproscan
GO:1990904	Cellular Component	ribonucleoprotein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13178	DDX17; ATP-dependent RNA helicase DDX17	EC:5.6.2.7	Spliceosome	ko03041	deepkoala