Gene detail

Detailed information of XP_065660661.1 in Hydra vulgaris

Genomic Location: NC_088928.1:5521401...5544414
NR annotation: XP_002157477.2, RNA-binding protein 25 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_065804589.1

TACATtctatacaaaattattttttatttagtaaactatataaatatattaaaaaaatgcctcCTGTTATGAATGGAATTGTACCCCCATTGgtccAAAAGCAAGAAATCACCACTGTTTTTGTAGGTAACATTACTGACAAAGCTTCTGACACTCTAATTAGACAAATTCTGATGaaatgTGGTTATATTGTTAGTTGGAAACGTGTTCAGGGCGCAGCTGGCAGACTTCAAGaaaacCAAATTTACCAAATCTCTTTGACTAATTGAGAACGATGGAGACACATGAAGACTCCTTGGCTGAAAATCTGTTCAAAGGAAGTTGATGTTGCTGGAATGTACAagcatTTGGTTTTTGTGAGTATTCTGATCCTGAAGCTGGTCTAAGATCAATGCGGTTATTAAGTGGATTTCAAATTGGCGATAAAAAGTTGCTTGTAAAAGTTGACTCAAAAACTCGATCACAGTTAGATCGTTATAAAGaacaaaagaaaattgaaaaagaagtttTGTGTGATTCTGGTGAAAATTTGGATGATTATGATATTGAATATGATGAAGAAACTAAAaaacaaGATGATGGCATTCGTAAAGAAATTGAAAAGCTTATTCGTGATAACATGTCTGAATTAGATAgcggaatTTTGCAAACTTTTAAGAAAACTCACAGTGGTAATGCAGATGAACGAAAAGAGAGGGACAAAGAAAGAGAGCGAAGTCGAGAAAAGGATAGACATCGTGATCGAAGtaaagaaagagaaagagaatatgaaagagaaaaagaaaagcaaagagaaaaagaaagagAACGCGAACGTGAAAAGGAAAGAGAAAGAGAACGGGAACGCGAGCGCGAGAAAcgaaaaagagaaagagaaagagaagaaCGCGAAGAAAGAGAAAGTCGTAGTAAACATGAAGAAGCAGAGGCACCAATAAGAAGTTCTAGGCGTTCTAAATCACGCTCTCGTGAGAGAGATAGAGGAGGTATAGAAGATAATGACGAAGAGTATGAACGAAGAAGGATGGAGAGAATTAGAAAGGATAAAGAGCATGCGTTTCTTGAGaaattaaaagaatGGGAAATACGCGAGCGAAAGAGGGCTCGCGACTATGAAAAGCAATCAACTAAAGAAGAACGTAAAAGAacagaagaagaagaagaaagaGCTCATCTATTGGAATTTTTAGAGGATTATGACGATGATAGAGATGATGTTAAATACTATAAAGGGAGTGCTCTTAGTCGACGCATGCGGGACAGAGACCTTGAGATACAAGCTGATGCTCGTGACAAACAAAGAGAGATGGAGGAAATTGAAGAAGTACTTAAGAAACAGTTAGCTGGTGAACctattgaaactaaaaagaaacGTGGAAATGATCCCGAGAAAACATCTATACAACAAGAACTTATGGAAATCGAAAGACAACAACAACCTGTTGCACCACCTGTACAACAAAATCCTAATCTTCGACCAGCTTTTACTGCAATAAATGAAGAAACACCAGATACATCACCTGCTCAGCAGGATACTAATTCACCAAGCCCAATGAGTAGTCCATCGTTCACGAAGTTTAAGCTTACCCCAGAGTCTAAAGGAGCTACACCGTCTCTTAAACGCGAACATTCTGAAGTAAATGGTTCTAATGAGCCAGTGTCCAAAAAGTTTGGTTTTGGTATGAAAGTGGCTTCAaatgttgcaaataaaaataagttaggAACAGTTTTTAATGTAAACGAAGATGTCCAAGGTGCTAATGAAGAACCAAAAAAGAAACTATCTCGTCTTGATGAAGATCCTAAGAAAGAGCCGCCAACAGTTGatgataaaagaaaattgattaaaaatcttatagaaAAAATACCTACAGTTAAAGAGGATTTATTTTTGTATCCATTAAAATGGGAAATAGTTGACGAAACATTAGTTGAAAAACGGATTAAACCATGGGTtaacaaaaagatatttgaGTACATAGGTGAAGAAGAGCAAACTCTTGTCGAATTCATATGCAGCAAGgtactAAGTAAAAGCAGTGCAAAAAATATCTTAGAAGATGTTGCTATGGTTTTGGACGAGGAATCAGAAGTTTTTGTCGTAAAAATGTGGCGTTTACTCATTTACGAAACCGAGGCTAAATGTCTAGGATTGGTTAAGTAGCTAGATTTCAGGGTGTGTTTTAAGCTCCCTAGTTATATCAACATAAAGAAAGAAATGGCGCCTATGTACTAttaaaaatatcgaaaaaaatgCTTCTTCTAACTGGTTATTAGCTAACACAGGAGTTTTGGAAGTTTATCACTATATTATCGTGTGGTTATTTGACACATGTATTTTAAtcctgtttattaaataaaatcaaattttctaAAGTGAAACtaagtttgataaaattaa

Protein

Uniprot

Uniprot term	Description
P49756	RNA-binding protein 25 OS=Homo sapiens OX=9606 GN=RBM25 PE=1 SV=3
B2RY56	RNA-binding protein 25 OS=Mus musculus OX=10090 GN=Rbm25 PE=1 SV=2
Q8VY15	RNA-binding motif protein 25 OS=Arabidopsis thaliana OX=3702 GN=RBM25 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01480	PWI	PWI domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036483	Homologous_superfamily	PWI domain superfamily	Interproscan
IPR052768	Family	Pre-mRNA_splicing_regulatory_protein	Interproscan
IPR002483	Domain	PWI domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR18806	RBM25 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000381	Biological Process	regulation of alternative mRNA splicing, via spliceosome	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0005681	Cellular Component	spliceosomal complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K12822	RBM25, S164; RNA-binding protein 25	-	Spliceosome	ko03041	deepkoala