Gene detail

Detailed information of XP_065661296.1 in Hydra vulgaris

Genomic Location: NC_088928.1:27619729...27682793
NR annotation: XP_047132529.1, DNA helicase MCM9 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC105843323

ATGAACAAGTTAGATACATCTGAAGCACAAAAAATATTTGAAACTTTTCTTGAAAAATACCATGAAGAAGATGTTCTTCGTATTTTGCTATCAGCCAATAAAACAGAGCATTTCTCTATCATTGTTAATGCATTTGAAATGTTTGATGCAAGTATGGACATTTCATATCAGTTTTTAAAAAATCCTTCTTTACTTCTCCCTACATTTGACAGTGCTGTTTGCAGTGTTCAGCTTCAAGTTATGTCAAAATATGAAACATTGAATAAATCATCTATGAGCATAAAAAACAATTGTCATATTAGGGTTACAAATCTCCCTATCTGTCCTGAATTGTCACGTGATCACTTGCCAAAATGTGAAGATGTTGGTAGTTTTTTATCTGTAAAAGGAACAGTGATTCGTTGCACTTTGACAAAGTTACTTGAGTATCAGCGACAATATATTTGCAATAAGTGTCATCACATTTTTGATTTGTCTGCTGAGTTTGAGCAAAACTATACTATTCCTTTACCAACTCTGTGTCCTTCACCAGAAAGTTGCAACTCTAAGAAATTTACTGCATTAACAAAAACAAAAAAATGCAAAGATTATCAAGAAATTAAAATCCAAGAGCAAGTACAAAATTTACATTTCGGCCACATTCCTCGTTCTATCTGGGTTTTATTAGAAGATGACCTAGTTGACTCTTGTAAACCAGGAGATGATGTAACAATTACAGGAATAATTTTACAAAGGTGGAAAAGTCTTTATAAAGATAATAAATGTGATGTAGAGCTTGTTCTAAAAGCAAACCATGTTGTTATTGAAAATATTCAACATTGTTCCAGTTCAATGAATGACCAGCATCAGAAAGAATTTCATGAGTTTTGGTCTTTGTACCAATCATCACCATTAAGAGGGCGCAATGAAATCCTTAGATCTTTTTGTCCACAGGTTTATGGCCTATATCTTGTAAAATTAACTGTTGCATTAGTATTAGTTGGTGGAGTTCAACGACTGAAAAAGTCTGGAACTAAAATACGTGGAGAATCTCATTTGTTGTTGGTTGGTGATCCAGGTACAGGAAAATCTCAGTTTTTAAAATATGCAACAAAGTTGATGAAGCGTTCAGTTTTAACTACTGGAGTTGGCTCAACAAATGCAGGTTTAACTGTTACTGCTGTAAAAGATTGTGGTGAATGGCATCTTGAAGCTGGTGCACTGGTACTCGCAGATGGGGGTGTTTGTTGTATAGACGAGTTCAATAGTATTCGTGATAATGATAGAGCAAGTATACATGAGGCTATGGAACAACAGACAATAAGTGTTGCAAAAGCAGGGATGGTTTGCAAATTAAACACCAGAACAACAATTATTGCAGCTACAAATTCAAAAGGGAAATATGATCCAGACCTTAGCTTATCTGCAAACATTGCTCTTGCAAGCCCTCTTTTAAGTAGATTTGATGTTATTCTTGTATTGAAGGATAATCAAAATAAGGAATGGGACAAGTATTTATCTAACCGCATACTTACAAATAAAATATCTCTAAGGGAAGTTGATGCTTCTAATAGCTGTTGGAATATTGAACAATTACAAACTTATTTTGCCTATGTCAAGACATTATCTCCTGAACTTTCTAAAGACTGCTGCAGTATTCTTCAAACATACTATCAAGCTCAAAGGGCTGCTGCCACACATACTGCTGCAGCACAAACAACAATACGTTTATTGGAAAGCTTGATTCGTCTTTCTGAGGCTCATGCACGTTTAATGTTTCATAATGAGGTTACTATTCAAGATGCTATTGTTGCTGTATGCATTATTGAAAACTCTATGCAAAATATGTCTTTACTTGGAGGTTATAATTATCTACATGTTTGCTTTCCAGAGGATCCAGATAAAGAATATTTTGAGAGTGCTAAGTTAATTCTTGAAAAACTTAACTTACATACTATTCTTGCTAAAGTAATTGAAAAAGAAGAAATTCGATTAAAAGAAAAGGTTGTTGTTGGAAGTTGTACAGATTTTGAATCAGAGCAACAAAAAATTGATAACACTTGCACAACAATCAAAAGTTCTGAAAAAAACAAAAGTTTAATAGCAGAAAATGAACTGCCAGAAAAATGTAATCTAAATGATAATGTGTACCCTTTCGATATATGCATGTTGAATTCTAATTTATCTGCAAAAAACGATGTCGAGGATCATTTATCACAAAAGAATATAGATAAAAGCTCCAGCAGTTGCTTAAACAAAATCATGCTAAAGAGAAGTAATCATGAAACAACTTTCAATCATGAAACAATTTTAAGCGAAAAATCTCTTAATAAATTAAATAGTTTTAAGTTTAGAAAGATTTGA

Transcript

rna-XM_065805224.1

TAGTTATCTATAGCCAAATGAACAAATAATATACACCTAAATTGTGTttacttaattataaaattttgtttgtttggaAAATGAACAAGTTAGATACATCTGaagcacaaaaaatatttgaaacttttcttgaaaaatacCATGAAGAAGATGTTCTTCGTATTTTGCTATCAGCCAATAAAACAGAGCATTTCTCTATCATTGTTAATGCATTTGAAATGTTTGATGCAAGTATGGACATTTcatatcagtttttaaaaaatccttcTTTACTTCTCCCTACATTTGACAGTGCTGTTTGCAGTGTTCAGCTTCAAGTTATGTCAAAATATGAAACATTGAATAAATCATCTATGAgcataaaaaacaattgtcatATTAGGGTTACAAATCTCCCTATCTGTCCTGAATTGTCACGTGATCACTTGCCAAAATGTGAAGATGTTGGTAGTTTTTTATctgtaaaaggAACAGTGATTCGTTGCACTTTGACAAAGTTACTTGAGTATCAGCGACAATATATTTGCAATAAGTGTCATCACATTTTTGATTTGTCTGCTGAGTTTGAGCAAAACTATACTATTCCTTTACCAACTCTGTGTCCTTCACCAGAAAGTTGCAACTCTAAGAAATTTACtgcattaacaaaaacaaaaaaatgcaaagattatcaagaaattaaaatccAAGAGcaagTACAAAATTTACATTTCGGCCACATTCCTCGTTCTATCTGGGTTTTATTAGAAGATGACCTAGTTGACTCTTGTAAACCAGGAGATGATGTAACAATTACAGGAATAATTTTACAAAGGTGGAAAAGTCTTTATAAAGAtaataaatgtGATGTAGAGCTTGTTCTAAAAGCAAACCATgttgttattgaaaatattcaacATTGTTCCAGTTCAATGAATGACCAGCATCAGAAAGAATTTCATGAGTTTTGGTCTTTGTACCAATCATCACCATTAAGAGGGCGCAATGAAATCCTTAGATCTTTTTGTCCACAGGTTTATGGCCTATATCTTGTAAAATTAACTGTTGCATTAGTATTAGTTGGTGGAGTTCAACGACTGAAAAAGTCTGGAACTAAAATACGTGGAGAATCTCATTTGTTGTTGGTTGGTGATCCAGGTACAGGAAAAtctcagtttttaaaatatgcaacaaAGTTGATGAAGCGTTCAGTTTTAACTACTGGAGTTGGCTCAACAAATGCAGGTTTAACTGTTACTGCTGTAAAAGATTGTGGTGAATGGCATCTTGAAGCTGGTGCACTGGTACTCGCAGATGGGGGTGTTTGTTGTATAGACGAGTTCAATAGTATTCGTGATAATGATAGAgcaagtATACATGAGGCTATGGAACAACAGACAATAAGTGTTGCAAAAGCAGGGATGGTTTGCAAATTAAACACCAGAACAACAATTATTGCAGCTACAAATTCAAAAGGGAAATATGATCCAGACCTTAGCTTATCTGCAAACATTGCTCTTGCAAGCCCTCTTTTAAGTAGATTTGATGTTATTCTTGTATTGAAGGATAATCAAAATAAGGAATGGGACAAGTATTTATCTAACCGCAtacttacaaataaaatatctctAAGGGAAGTTGATGCTTCTAATAGCTGTTGGAATATTGAACAATTACAAACTTATTTTGCCTATGTCAAGACATTATCTCCTGAACTTTCTAAAGACTGCTgcagTATTCTTCAAACATACTATCAAGCTCAAAGGGCTGCTGCCACACATACTGCTGCAGCACAAACAACAATACGTTTATTGGAAAGCTTGATTCGTCTTTCTGAGGCTCATGCACGTTTAATGTTTCATAATGAGGTTACTATTCAAGATGCTATTGTTGCTGTATGCATTATTGAAAACTCTATGCAAAATATGTCTTTACTTGGAGGTTATAATTATCTACATGTTTGCTTTCCAGaggatccagataaagaatattttgagAGTGCTAAGTTAATTCTTGAAAAACTTAACTTACATACTATTCTTGCTAAAgtaattgaaaaagaagaaattcgATTAAAAGAAAAGGTTGTTGTTGGAAGTTGTACAGATTTTGAATCAGagcaacaaaaaattgataacactTGCACAACAATCAAAAgttctgaaaaaaacaaaagtttaatagCAGAAAATGAACTGCCAGAAAAATGTAATCTAAATGATAATGTGTACCCTTTCGATATATGCATGTTGAATTCTAATTTATCTGCAAAAAACGATGTCGAGGATCATTTATCACAAAAGAATATAGATAAAAGCTCCAGCAGTTGCTTAAACAAAATCATGCTAAAGAGAAGTAATCATGAAACAACTTTCAATcatgaaacaattttaagcgaaaaatctcttaataaattaaatagttttaagtttagaaagatttgatgtttttttctcaataataaataaagaaaattactcAGTAATAAACTGTATATAAATTGTTGCtaaatgttgttgttgttaaatctttttttattctataagagagttttataaaa

Protein

Uniprot

Uniprot term	Description
F6RIX4	DNA helicase MCM9 OS=Xenopus tropicalis OX=8364 GN=mcm9 PE=3 SV=1
F1QDI9	DNA helicase MCM9 OS=Danio rerio OX=7955 GN=mcm9 PE=3 SV=2
Q6NRM6	DNA helicase MCM9 OS=Xenopus laevis OX=8355 GN=mcm9 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17207	MCM_OB	MCM OB domain	Domain	Interproscan
PF17855	MCM_lid	MCM AAA-lid domain	Domain	Interproscan
PF00493	MCM	MCM P-loop domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003593	Domain	AAA+ ATPase domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001208	Domain	MCM domain	Interproscan
IPR031327	Family	Mini-chromosome maintenance protein	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR033762	Domain	MCM OB domain	Interproscan
IPR041562	Domain	MCM, AAA-lid domain	Interproscan
IPR018525	Conserved_site	Mini-chromosome maintenance, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11630	DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016887	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan
GO:0032508	Biological Process	DNA duplex unwinding	Interproscan
GO:0000724	Biological Process	double-strand break repair via homologous recombination	Interproscan
GO:0003697	Molecular Function	single-stranded DNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0017116	Molecular Function	single-stranded DNA helicase activity	Interproscan
GO:0042555	Cellular Component	MCM complex	Interproscan
GO:0006260	Biological Process	DNA replication	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10738	MCM9; DNA helicase MCM9	EC:5.6.2.4	DNA replication proteins	ko03032	deepkoala