Gene detail

Detailed information of XP_065662358.1 in Hydra vulgaris

Genomic Location: NC_088928.1:62539012...62541882
NR annotation: XP_002159721.2, mRNA decay activator protein ZFP36L2-B [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_065806286.1

AAAACCTTTcgtcaatgttttttttttatatcttcgtCAATTAGACTTAAACGCGTGGAACGtgttaaacaatattttgtagttgttgaaaactttatttaatatttttttaaaatgagtacAGCTTTGGTTTCGGCATTTTACGATATTAATGATGTTATTCAACagagtAAACAGCGACCAATGTTAGATTTACGTCAAAAACTAGAAGATCGAAGGccaaataatttagttattcCTCGACGTCACTCAACTAACTCAACGACTTTAATTAGTTTAACCACACAAATTACTAAAGCCCAGGTTTTGTCACCCAGTTCTTTAAGCTTTTACCCGATGCCTTCTTCGCCCAAGGATAAATTTTCGGGAAATGTTTCACCATTTCGAGAAAGAGCACAGAGTGCAAGTTTCCAAGAAGAACTAGATGCACAACAGAGAAAGAGAAATTCCACGAATTCTAGTCGCTATAAAACGGAGCTGTGTCGACCATTTGAAGAAAACGGAACATGCAAATATGGCGATAAATGTCAATTTGCTCATGGTTTTCATGAACTAAGGGGATTGAATCGACATCCCAAATACAAAACGGAATTTTGTCGAACTTATCATACCATTGGTTTTTGCCCTTACGGACCGCGATGCCATTTCATTCATAACGACGAAGAGAAAAAATTAGCTTTAACTAGTCTGGGTCGATCATGTTCTATATCAAGTATGGATTCGATTCCCCCTTCCCCGGCACACGATGTTGCCCCTTCGCCATTTGGCAATTCACTTACACCACCATTATCACCAGGGTATGGTGGTGACGTGTTTCTTTTTGATGAACCTTCGCATGTTGCTCAAAACCCTTTGGCGGTGTGCGGACAAAACGCAATGAGTGTAATTCCAGAAAACTCTTTTCCATCTCCCTGTAGTTCCGTTAAAATAAACAGACTTAAAAGTAATGATTACATTCCGTTAACTTCTATGGTTAGTGGATTAAGTTTTCAGGGTATGAAGCCGATAATAAATGAACGCTATACAACAACACCATCAGATTCAGGATCTTCAAACCCTCCCTCACCCGTCGAAAAGCTTCGTCGTCTACCAGTGTTTGGTGGTTTGAATTAGtgagttaagttttttttttctataaaggaaatttttttatgtatagcAATAagttaagaaattattttactagGTCGTATGTAATACGatcttttttgtcaaaattcccggaggtaagcagaaaaagcgCCCCGTTTATATTTGTTCTAGATTTAagattaatcaaaatataagaatttttgtttaaaatatatttatatttatatattttatttttggaagtTTTATGcgtataaattttgataaaagtatGGAGTTTTTATTTCGGTGATGGTGCGAGCCATTTGTCTTGCGGCTATATAAAATATCAGTCAGGGCGTCGCGAGgtctcttttttaaaacttcgtaatccattttataaaaaatttgttgtaatcAGAATTGGGTATTCAAATAATCTCTGATATTTTTTTGCCTAATAACTTCTGATAAGAAATATGCGTCATTAATCCTGACTGAAGccaataagctttttttttttttttttttttcgctccATTGCACATATTAGTCATAGGTTTCGTAATTTTTAACGACAGAAAATCTTAATATAATCTTAAtttatacaaacatttttttcaaagtgttttctcattttctttgttatttaaaatgttctatttattgactttgtttttttttgtttttttttgtaatatattatttttgctacgTTTTGCGGAAATTGTGTTTTCTCATAGGAGAGTTTACGCcgcaaatatattataataatattattaaaaagagtattatatcattttaaaatttaagtttttttttcttatattttatccTTTTACGAgacttttattcaaatttaatttataaactaacaTCTTATGTTAAATGTATGCAGTGATATTTTTTGGAGAAttccttgtatatatatatatgttaaacgCCAAGGAGGAGGTTGCTATTTTTTAAGTGTTAACTCAGCTTTGTAGCAAATGTTAGCAGTGCGTGGCCAATATCTGTTTACTCAGACTGATTTTCAtttgtttagcttttttttgtaagtttcttaaaaaagactgcgtttgtaaataaaagccgtgtttttttaacgttaatcCTTAGATTGAATGGTTTAGgcttgtttttgtaaatttaaagttgttGCTAAGCCTCTCACTATTTATGTCGCCAACCTCCACTTGGTGAAGTTTTACCTCTACTTGGTGaagttttatacttatttagtacattagtttgtaaaatacaaaaaagaataaattatgttgtttaatttataacagGTCTCAACCTAACCTGTTTTGTGGGTTGGTTGAGATTTTATTGTATTGTAGGTATTCCTACCcaagttgtaatttatatacGTTTTGATcagttttttcaattga

Protein

Uniprot

Gene family

Uniprot term	Description
Q805B4	mRNA decay activator protein ZFP36L2-B OS=Xenopus laevis OX=8355 GN=zfp36l2-B PE=1 SV=1
P23950	mRNA decay activator protein ZFP36L1 OS=Mus musculus OX=10090 GN=Zfp36l1 PE=1 SV=1
A4IIN5	mRNA decay activator protein ZFP36L2 OS=Xenopus tropicalis OX=8364 GN=zfp36l2 PE=2 SV=2

Gene family	Subfamily
Transcription Factors Family	zf-CCCH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00642	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR036855	Homologous_superfamily	Zinc finger, CCCH-type superfamily	Interproscan
IPR045877	Family	RNA-binding protein ZFP36-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12547	CCCH ZINC FINGER/TIS11-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18753	ZFP36L; butyrate response factor	-	Messenger RNA biogenesis	ko03019	deepkoala