Gene detail

Detailed information of XP_065663429.1 in Hydra vulgaris

Genomic Location: NC_088929.1:15909144...15954138
NR annotation: XP_047141703.1, tRNA (uracil-5-)-methyltransferase homolog A [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC100213671

ATGGCTGAAAATGTTGATAAAGTGAAGTGTGAGGTAAATGATTCAGAGAAATTAAATGATCTAACATGCGAGCAGACAGACAAATTAGCCAATCTAAAGAATTTAGAAAAGGAAGAAAAAAAGGAAAGTAAGTCAAATTTAGATGAGTTGACAGACGAGTATCATTATCTTAAATCCGGAGAGTATACATCCGAGATATTTAAAGTAGTTGTACACAACATTCCTGATAAAATCTCATTTGGTAGATTTCGTGAAACTGTTATCAAAGTGCTTGGTTTTACTCCTCACAAGACAAAATACAATAAAAATCAAGATTACGCATTCCTTGCTTTAAAAAATGAAGAAGAACGTCAGGTTGCGCTAGAAAAGTTGAACAACTTCAAATGGAAAAACAAAGTGTTGACAGTTAAGAAAGCTGCTCCATCTGGTGATCCATTAGTTATAGAAAGAAAACGAAAAGCTGCAGATGCTTCAAGAGACAGTTCATCAAAAAAAAGTAAAATTGATGAAGATGAAATTTCTTTTGATGAAAGAATATTTCATGTTGTTTGTCCATATTGGAATTATACATATGAAGAACAAATTAAGTTAAAAGAAAAGAACATTACTGATATTATCAAAAAACTAACAAAGTCTTTAAGGAATGATAAAAATGTTGATTCTAGTTGGTTGCCAAGTAAAGAGAATCTATGCTTAGAAATTCTTCCAATAATAAAATCGCCCGTAACATCACATTACCGCAACAAAGTTGAATTTACAATTGGGAAAGGTCCTGATGGTGTAGACAATATGGTTGGCTTTCGATTAGGTTCTTATAAAGCTGGGAGTTTAATAATAGTTGAACCTACAAAGTGTACTAATTGTTCCTGTGAAGCTATTGCCATTGCAAAAGATTTTTCAGAATTTCTACGAACTTTACCATATTCTTCATTTTGTGTATCAACTCATGTAGGACTCTGGCAACAATTAACTGTGCGAACTTCAAGCAGTAGCGACATTATGGCAATAATACAACTCAATCCTCAAGCAATTTGTAAAAAGGAAGAATATGATGAGTTAATTTTGAAATTACGTAAACATTTTACTGGAGAGTTTCGTTTGGTTAAAGTTACTTCTCTTTATATTTCATCCTCATCTCAAAAAAACAACAACATTGACACTTTTAAGCTAATTTATGGATCTGAGCATATCACTGAATCCTTGTTAGGTTTAAACTTTAGGATATCTGTTGACGCATTCTTTCAAGTTAACAAACCAGCAGCTGAGATACTATACAAGACAATATCTGAATGGTGTGAAACTTCTCTTAATGATGCATTAGTTCTTGACGTTTGTTGCGGTACAGGAACTATTGGTATATGCATTGCTAAAAATAAAAGGTTACCAGTTGTTGGCATTGAAATTTGTATTCAAGCTGTTCAAGATGCTAACTTCAACTCTGCAACCAATGGTGTTGCAAATGCAAAGTTTATTTGTGGAGCAGCAGAAAAAGTTCTTCATAACGAAATTAACAGAATTAATGCAAAAAATATTATTGCTATTGTTGACCCCCCAAGGGCAGGCTTGCACAAAGATGTACTTAAATGCCTTCGATCTTGTGCAGCTATCAAAAAGATTATATTTGTTTCTTGTAGTCCAAAACAAGCTGCAGACAACTTAATATTCTTATGTCAAAAACAAAGCAAGAGGCGTGCTGGAAAACCATTTAAAACAAAACGTGCAGTGCCCATTGATTTATTTCCAATGACTCCTCATTGTGAATTGATAGTTGAACTAGAAAGAGTAAATGATACTTCTAGCATAAGCAAGTTACAGAATCCAACACCTATAAATGATTCAAAAGTCAAATCTGATTTAGGTGATGATAAAATATTAGCAGGTATGAATGCAGTTAATAATACGATCAGTGTTTCAATGGAATTGAACTTATTAGAGAGTGGTGTTTCTGAAGAGATTAAGACATGTTCTGTTATCAACACTGTTGTATAA

Transcript

rna-XM_065807357.1

tgtaaaatagcTTACCATTCTAATATGTTAAAATGGCAGTGACAGTGAAATGGttgcttttttgttattttagtttaaaagtaaTATGGCTGAAAATGTTGATAAAGTGAAGTGTGAGGTAAATGATTCAGAGAAATTAAATGATCTAACATGCGAGCAGACAGACAAATTAGCCAATCTAAAGAATTTagaaaaggaagaaaaaaaggaaagtaAGTCAAATTTAGATGAGTTGACAGACGAGTATCATTATCTTAAATCCGGAGAGTATACATCCGAGATATTTAAAGTAGTTGTACACAACATTCCTGATAAAATCTCATTTGGTagaTTTCGTGAAACTGTTATCAAAGTGCTTGGTTTTACTCCTCACAAgacaaaatacaataaaaatcaaGATTACGCATTCCTTGCTTTAAAaaatgaaGAAGAACGTCAggttgCGCTAGAAAAGTTGAACAACTTCAAATGGAAAAACAAAGTGTTGACAGTTAAGAAAGCTGCTCCATCTGGTGATCCATTAGTTATAGAAAGAAAACGAAAAGCTGCAGATGCTTCAAGAGacagttcatcaaaaaaaagtaaaattgatGAAGATGAAATTTCTTTTGATGAAAGaatatttcatGTTGTTTGTCCATATTGGAATTATACATATGAAGAACAAATTAAGttaaaagaaaagaacattactgatattatcaaaaaactaacaaaGTCTTTAAGGAATGATAAAAATGTTgaTTCTAGTTGGTTGCCAAGTAAAGAGAATCTATGCTTAGAAATTCTTCCAATAATAAAATCGCCCGTAACATCACATTACCGCAACAAAGTTGAATTTACAATTGGGAAAGGTCCTGATGGTGTAGACAATATGGTTGGCTTTCGATTAGGTTCTTATAAAgcTGGGAGTTTAATAATAGTTGAACCTACAAAGTGTACTAATTGTTCCTGTGAAGCTATTGCCATTGCAAAAgatttttCAGAATTTCTACGAACTTTACCATATTCTTCATTTTGTGTATCAACTCATGTAGGactCTGGCAACAATTAACTGTGCGAACTTCAAGCAGTAGCGACATTATGGCAATAATACAACTCAATCCTCAAGCAATTTGTAAAAAGgaaGAATATGATgagttaattttgaaattacGTAAACATTTTACTGGAGAGTTTCGTTTGGTTAAAGTTACTTCTCTTTATATTTCATCCTCATCTCAAAAaAACAACAACATTGACACTTTTAAGCTAATTTATGGATCTGAGcatatCACTGAATCCTTGTTAGGTTTAAACTTTAGGATATCTGTTGACGCATTCTTTCAAGttaacaaaccAGCAGCTGAGATACTATACAAGACAATATCTGAATGGTGTGAAACTTCTCTTAATGATGCATTAGTTCTTGacgTTTGTTGCGGTACAGGAACTATTGGTATATGCATTgctaaaaataaaaGGTTACCAGTTGTTGGCATTGAAATTTGTATTCAAGCTGTTCAAGATGCTAACTTCAACTCTGCAACCAATGGTGTTGCAAATGCAAAGTTTATTTGTGGAGCAGCAGAAAAAGTTCTTCATAACGAAATTAACagaattaatgcaaaaaatattattgctattgttgACCCCCCAAGGGCAGGCTTGCACAAAGATGTACTTAAATGCCTTCGATCTTGTGCAGCTatcaaaaagattatatttgtttCTTGTAGTCCAAAACAAGCTGCAGACAACTTAATATTCTTATGTCAAAAACAAAGCAAGAGGCGTGCTggaaaaccatttaaaacaaaacgtGCAGTGCCCATTGATTTATTTCCAATGACTCCTCATTGTGAATTGATAGTTGAACTAGAAAGAGTAAATGATACTTCTAGCATAAGCAAGTTACAGAATCCAACACCTATAAATGATTCAAAAGTCAAATCTGATTTAGGTGATGATAAAATATTAGCAGGTATGAATGCAGTTAATAATACGATCAGTGTTTCAATGGAATTGAACTTATTAGAGAGTGGTGTTTCTGAAGAGATTAAGACATGTTCTGTTATCAACACTGTtgtataaatacattttaaacttttaaaatttttttaaaggacttttatgttttaattagaTAGTTGAAAATAGGTCAAACTATGa

Protein

Uniprot

Uniprot term	Description
Q8IZ69	tRNA (uracil-5-)-methyltransferase homolog A OS=Homo sapiens OX=9606 GN=TRMT2A PE=1 SV=2
Q8BNV1	tRNA (uracil-5-)-methyltransferase homolog A OS=Mus musculus OX=10090 GN=Trmt2a PE=1 SV=2
A4QP75	tRNA (uracil-5-)-methyltransferase homolog B OS=Danio rerio OX=7955 GN=trmt2b PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05958	tRNA_U5-meth_tr	tRNA (Uracil-5-)-methyltransferase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029063	Homologous_superfamily	S-adenosyl-L-methionine-dependent methyltransferase superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR010280	Family	(Uracil-5)-methyltransferase family	Interproscan
IPR045850	Family	tRNA (uracil(54)-C(5))-methyltransferase, metazoa type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45904	TRNA (URACIL-5-)-METHYLTRANSFERASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0006396	Biological Process	RNA processing	Interproscan
GO:0008173	Molecular Function	RNA methyltransferase activity	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15332	TRMT2A; tRNA (uracil-5-)-methyltransferase	EC:2.1.1.-	Transfer RNA biogenesis	ko03016	deepkoala