Gene detail

Detailed information of XP_065663614.1 in Hydra vulgaris

Genomic Location: NC_088929.1:22964135...23064955
NR annotation: XP_002162990.2, probable RNA-binding protein 19 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC100215356

ATGTCAAGATTAATCGTTAAAAATCTTCCTAAAGATGTTAAAAAAGAAAGTGTTAAAGAATTATTTGAAAGTCAAGGTGGTGAAATAACTGATCTAAAACTATGTTTTACAAAAGAAGGAACATTTAGAAAATTTGCTTTTGTTGGATACAAAACAGATACAGAAGCATTAGCTGCTCTAAAATTTTTAAACAATACTTTTATGGGTACGAGTAAAATTCATTTGGAGATATGTAAAGATTTAGGCGATCCATCAGTTCCTCGTCCTTGGAGTAAGTATTCTAAAGGCAGCTCTTCTTTTTCTAGAAAAGCACACGAAATTGAAGAAAGAAAAAATTATATAAAAGAACTACAGTTTGGGAAAAGTAATGAATCAAAGTTAAAAAAAGAGTTGAAAGAAAAATCAAAAAATGAATTTAAGGATTTGGAAAATAATAGTGAGTTTCAAGACTTTGTAGGAGTCCATTTAAACAAAGGCATAAAACAGTCCTGGACAAACGACAATATAAATTATATTAAAACCAAAACTGAAAAGATTTCGAAAAGAAAGAAAGAAAAGAATGATATCAAAGAGAATATTAATGTAAATTTTAATGATGAAGACAATGAAATAGAAGCTGAAAAAGTCAATGAGGACTGGAACAAAAAAGAAGCTGTTACAAGTTGTAAAGTGGAAACTGCTTACAATATTGAACAAAACAATAAAAAAGAAAATGTTGCAAAAATCAAGGATAAAACCTCTGATTTAGAATGGTTAAAGATAAAAACCTTGCAGTCTAAAGGAGAATCGACTGAGTCTGACGAAAAGACTGAAGAAACAGCAGATCGAGATTTAAATTCTGATGTTAAAGAAAATTCAGATGATTTGCAAGAAAATGTAACGAAAAAAACTTTTGATCAAGATATCAAGTCTATGACTGTTAAAATGAGAGGAATTCCATTCAAGTGCTCTGAAAAAGAAGTCATTAAATTTTTTAAACCACTTGTTATTGATGATATACGATTTCCTAAAAATAAAGATGGAAAATCCAGTGGGTATGCTTTTGTTGATTTTAAAACTATTGAAGATGTTAAAAGTGCATTAAAAAAAGACAAACAAAAGATTCAAGGAAGATACATAGAATTGTTTCCAGTAAACGATCTAGAAAATTTAAAACAGAATGATTTTACTAAAAAGTGGACTCAAAAGGGAGACGAGGCAGATGAAGATATATCAGACACAGGAAGGTTATTTGTTCGTAACTTATCCTATGCTTGCACAGAAGATAGTTTAACAAACTTGTTCTCTCAGTTTGGACCATTAATAGAAATAAATCTTCCAATTGATAAAAACTCAAACAAAACAACAGGTTTTGCTTTTGTGACTTTTATGTTGGCAGACCATGCAATTAAAGCAATGTCTAAATTAGACGGATCAATCTTTGAAGGACGCATATTGCATATACTCCCTGGAAAATCTAAAAAAGTCAAAGAAGAAGATAACACTCAATCATCATCATATAAAATAAAGCAAGAGGCTAAAAAAAAATTGCAAACTCATAATTGGAATGCACTTTTTCTTGGGCAAAATGCAGTAGTCGATGTTATGGCAAATAGACTTAACAAAAGTAAACATGATATTCTTGATACAGAATCATCTTCTAGTTTAGCAGTACGAATGGCGCTTGGTGAAACTGAACTTGTATCAGAGACAAGAGAGTTTCTTGAGTCAGAGGGGGTTAAACTCGATTGTTTTGGTCAAGCAAATTCCTTGCGAAGCAAAACTGTGATTTTGGTGAAAAATTTACCTCCACAAACTCTAACCAGTGAACTAAGGGAAATATTTTCTAAATATGGTGATCTTGGACGTCTACTAATGCCCCCATTTGGGATAACAGCCATTGTTGAGTTTATCCAATCTAAAGATGCAAAAAATGCATTTAATAATTTAGCCTACTCAAAGTTTAAACACACACCCCTTTATTTGGAGTGGGCACCTTTAGATGTATTGTCAGGAGAGGTTAAAAATGTTGTTGAAAAAAAGGTTGAAGATGTGGAATCTGAAGATGAAATCAATGATGCACAAGCTGTTCTTTTTGTTAAAAATTTGAATTTTAATACTGCTGAAGAGAGATTTAAAGAGTTTTTTTCAAGTTGTGGAGAAATAAAAAGTGTAACAATTGCTAAAAAGCAAGATCCAAAAAATCCTTCAGCTATGTTATCAATGGGATATGGTTTTATTGAATACAAAAAAATAGAAAGTGTTGAAAAAGCTTTAAAGCTACTTCAGTATTGTGAACTGGATGGTCATAAAGTTGAGCTGAAAAAGTCTCATAGAGAATCGATTTTGCCTAAAGTATCAAGAAAGCGTGCTAATGAGAAAAATCAAGTTAGCAGTAAAATGGTGGTTCGCAATATACCATTTGAAGCCACTGTCAAGGAACTTCAAGAATTATTCAGTACGTTCGGTCACATAAAATCTTTGCGATTACCAAAGAAAATAACTGGTGCTCATCGTGGATTTGCTTTTATAGATTTCACTACTAAACAGGATGCTAAACGAGCATTTAAAGCTCTTTGTCAAAGTACCCATCTCTATGGTCGTCGCTTAGTACTTGAATGGGCAGATGATGATGATAGTGTTGATTTATTAAGGAAGAAGACAGCTGAACTTTATCACGAATCTTCAGAGCCGTCTGCAAAAAAGTCTAAAATGAGCTTGCAGAGCGCACTTGAAAAGACAAAGATTTCATCAGATAGTTTGTAA

Transcript

rna-XM_065807542.1

ACTTGAATCAATAAACCATTTTGaaccttttaaaaatgaaaaactctGTGTTACTAGAGTTGACGGCAAGATTTTAAGAACCGTTCAAGTACCAATTTTTTGCggccaaattttaaaaacttgacgATTATTtgatatgcaataaaaaaaagcacgtttaatatataaaaaaataaacatactaTAATTTCTATAAAAGGGTAAAACTAACATGTCAAGATTAATCGTTAAAAATCTTcctaaagatgttaaaaaagaaagtgttaAAGAATTATTTGAAAGTCAAGGTGGTGAAATAACTGATCTAAAACTATGTTTTACAAAAGAAGGAACATTTAGAAAATTTGCTTTTGTTGGATACAAAACAGATACAGAAGCATTAGCtgctctaaaatttttaaacaatactttTATGGGTACGAGTAAAATTCATTTGGAGATATGTAAAGATTTAGGCGATCCATCAGTTCCTCGTCCTTGGAGTAAGTATTCTAAAGGCAGCTCTTCTTTTTCTAGAAAAGCACACGAAattgaagaaagaaaaaattatataaaagaactACAGTTTGGGAAAAGTAatgaatcaaagttaaaaaaagagttgaaagaaaaatcaaaaaatgaatttaaggATTTGGAAAATAATAGTGAGTTTCAAGACTTTGTAGGAGTCCATTTAAACAAAGGCATAAAACAGTCCTGGACAAACgacaatataaattatattaaaaccaAAACTGAAAAGATTTcgaaaagaaagaaagaaaagAATGATATCAAAGAGaatattaatgtaaattttaatgatgAAGACAATGAAATAGAAGCTGAAAAAGTCAATGAGGACTGGAACAAAAAAGAAGCTGTTACAAGTTGTAAAGTGGAAACTGCTTACAATATtgaacaaaacaataaaaaagaaaatgttgcAAAAATCAAGGATAAAACCTCTGATTTAGAATGGTTAAAGATAAAAACCTTGCAgtctaaaGGAGAATCGACTGAGTCTGACGAAAAGACTGAAGAAACAGCAGATCGAGATTTAAATTCTGATGTTAAAGAAAATTCAGATGATTTGCAAGAAAATGTAacgaaaaaaacttttgatcaaGATATCAAGTCTATGACTGTTAAAATGAGAGGAATTCCATTCAAGTGCTCTGAAAAAgaagtcattaaattttttaaaccacttGTTATTGATGATATACGATTTCCTAAAAATAAAGATGGAAAATCCAGTGGGTATgcttttgttgattttaaaactattgaagatgttaaaagtgcattaaaaaaagacaaacaaaaGATTCAAGGAAGATACATAGAATTGTTTCCAGTAAACGatctagaaaatttaaaacagaatgATTTTACTAAAAAGTGGACTCAAAAGggagACGAGGCAGATGAAGATATATCAGACACAGGAAGGTTATTTGTTCGTAACTTATCCTATGCTTGCACAGAAGATAGTTTAACAAACTTGTTCTCTCAGTTTGGAccattaatagaaataaatcttccaattgataaaaactcaaacaaaacaACAGGTTTTGCTTTTGTGACTTTTATGTTGGCAGACCATGCAATTAAAGCAATGTCTAAATTAGACGGATCAATCTTTGAAGGACGCATATTGCATATACTCCCtggaaaatctaaaaaagtcaAAGAAGAAGATAACAcTCAATCATCAtcatataaaataaagcaagaggctaaaaaaaaattgcaaactcATAATTGGAATGCACTTTTTCTTGGGCAAAATGCAGTAGTCGATGTTATGGCAAATAGACTTAACAAAAGTAAACATGATATTCTTGATACAGAATCATCTTCTAGTTTAGCAGTACGAATGGCGCTTGGTGAAACTGAACTTGTATCAGAGACAAGAGAGTTTCTTGAGTCAGAGGGGGTTAAACTCGATTGTTTTGGtcaagCAAATTCCTTGCGAAGCAAAACTGTGATTTTGGTGAAAAATTTACCTCCACAAACTCTAACCAGTGAACTAAgggaaatattttctaaatatggTGATCTTGGACGTCTACTAATGCCCCCATTTGGGATAACAGCCATTGTTGAGTTTATCCAATCTAAAGatgcaaaaaatgcatttaataatTTAGCCTACTCaaagtttaaaCACACACCCCTTTATTTGGAGTGGGCACCTTTAGATGTATTGTCAGGAGAGgttaaaaatgttgttgaaaaaaaggtTGAAGATGTGGAATCtgaagatGAAATCAATGATGCACAAGCtgttctttttgttaaaaatttgaattttaatactGCTGAAGAGAGATTTAAAGagtttttttcaaGTTGTGGAGAAATAAAAAGTGTAACAATTGCTAAAAAGCAAGATCCAAAAAATCCTTCAGCTATGTTATCAATGGGATATGGTTttattgaatacaaaaaaatagaaagtgTTGAAAAAGCTTTAAAGCTACTTCagtattgtgAACTGGATGGTCATAAAGTTGAGCTGAAAAAGTCTCATAGAGAATCGATtttGCCTAAAGTATCAAGAAAGCGTGCTAATGAGAAAAATCAAGTTAGCAGTAAAATGGTGGTTCGCAATATACCATTTGAAGCCACTGTCAAGGAACTTCAAGAATTATTCAGTACGTTCGGTCACATAAAATCTTTGCGATTACCAAAGAAAATAACTGGTGCTCATCGTGGATTTGCTTTTATAGATTTCACTACTAAACAGGATGCTAaacgaGCATTTAAAGCTCTTTGTCAAAGTACCCATCTCTATGGTCGTCGCTTAGTACTTGAATGGGCAGATGATGATGATAGTGTTGATTTATTAAGGAAGAAGACAGCTGAACTTTATCACGAATCTTcagagccGTCTGCAAAAAAGTCTAAAATGAGCTTGCAGAGCGCACTTGAAAAGACAAAGATTTCATCAGATAGTTTGTAATAAAATGTACTTACTTATGTAAAGAAATCTTATAGTCAttcataa

Protein

Uniprot

Uniprot term	Description
Q9Y4C8	Probable RNA-binding protein 19 OS=Homo sapiens OX=9606 GN=RBM19 PE=1 SV=3
Q8R3C6	Probable RNA-binding protein 19 OS=Mus musculus OX=10090 GN=Rbm19 PE=1 SV=1
Q54PB2	Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium discoideum OX=44689 GN=mrd1 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR034423	Domain	Probable RNA-binding protein 19, RNA recognition motif 5	Interproscan
IPR050502	Family	Eukaryotic RNA-binding	Interproscan
IPR034421	Domain	Probable RNA-binding protein 19, RNA recognition motif 6	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48025	OS02G0815200 PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14787	MRD1, RBM19; multiple RNA-binding domain-containing protein 1	-	Ribosome biogenesis	ko03009	deepkoala