Genomic Location: NC_088929.1:26066579...26069362
NR annotation: XP_002153941.3, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 [Hydra vulgaris]
| CDS | |||||
| LOC100209593 | |||||
| Transcript |
| rna-XM_065807633.1 |
| Protein |
| XP_065663705.1 |
| Uniprot term | Description |
|---|---|
| Q6DFM1 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Xenopus tropicalis OX=8364 GN=smarcb1 PE=2 SV=1 |
| Q5ZK40 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Gallus gallus OX=9031 GN=SMARCB1 PE=2 SV=1 |
| Q6GQ82 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 OS=Xenopus laevis OX=8355 GN=smarcb1 PE=2 SV=1 |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF04855 | SNF5 | SNF5 / SMARCB1 / INI1 | Family | Interproscan |
| PF21459 | INI1_DNA-bd | SWI/SNF Subunit INI1, DNA binding domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR006939 | Family | SNF5/SMARCB1/INI1 | Interproscan |
| IPR048664 | Domain | SWI/SNF Subunit INI1, DNA binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR10019 | SNF5 | Interproscan |
| GO terms | Category | Description | Source |
|---|---|---|---|
| GO:0003712 | Molecular Function | transcription coregulator activity | Interproscan |
| GO:0003713 | Molecular Function | transcription coactivator activity | Interproscan |
| GO:0005634 | Cellular Component | nucleus | Interproscan |
| GO:0006338 | Biological Process | chromatin remodeling | Interproscan |
| GO:0035060 | Cellular Component | brahma complex | Interproscan |
| GO:0071564 | Cellular Component | npBAF complex | Interproscan |
| GO:0071565 | Cellular Component | nBAF complex | Interproscan |
| GO:1900461 | Biological Process | positive regulation of pseudohyphal growth by positive regulation of transcription from RNA polymerase II promoter | Interproscan |
| GO:0000228 | Cellular Component | nuclear chromosome | Interproscan |
| KO | Enzyme | Enzyme ID | pathway | mapID | Source |
|---|---|---|---|---|---|
| K11648 | SMARCB1, SNF5, INI1; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1 | - | Chromosome and associated proteins | ko03036 | deepkoala |
Maintained by Dr. Jiajie She from Prof. Longjun Wu's Lab & Prof. Pei-yuan Qian's Lab
Hong Kong Branch of the Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou)
Hong Kong University of Science and Technology
Clear Water Bay, Kowloon, Hong Kong
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