Gene detail

Detailed information of XP_065663914.1 in Hydra vulgaris

Genomic Location: NC_088929.1:33067132...33125336
NR annotation: XP_047141224.1, F-box/LRR-repeat protein 20 isoform X3 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_065807842.1

TTTAAGGAAAATGTGTTGTACAGTTTATAGATTCAGTAAAATCTTGTTAATTTGAAAGAAACCTGTgatatggTTTTGTTGTTTTCTCAAATCCTTTAGATGCTGATCGCGCAATCAATGCAAAAAAACATGAGATAACACTTGAAGGaagATTACTGGTTGTGAAAAAAGCTGAGAAGCGAAATGGAGgAAGCTGCTAATTACTTTATGGCagaagaggaaaaaaaaacagtagatacttttaaagtagaaaaacaaaacaaTTGTTATATCAATAAGCTGCATGATGATCttttctttcatatattttcttACCTTGACTTAAAAACGAAAATCAAGATGGAGTTagtttgtaaaagATGGCGTCAAATTTCACTTGATAATTGGAACTGTATTCACTATCTCAActttaaaggttttttcaaCACTTCAAACAGATTATcagGCTTAAATGACAATATACTGGTTGCAATTCTTAAAAAAGGCTGCAATAATTTGAAGTCTGTTGATTTTTCAGCATCTCCTtatgttataacaaaaataagtttttttatgattgGTAAAGTATGTAAACAGCTGCAGCAATTAAATATTTCTCGAACTTGTATCCAAAACAAAACGTTGAAATACCTTGGAGAAAATCTTCTTCAGTTgcaagttcttAAAATGGATAGGTGTTTAAATGTTGGAGAAAAAggtttttggtGGATGTTCAAAGGTTTAAAACATCTTGAAATACTTTCTGTAACAGAAAGCTCAAGGCTAATAGGAAAGtgcTTGTTTATGTTACACTCTTCATTAAAAGTTGTGGATTTCAGTAATTGCTCTCGATTAAATGATGGCGGAATATGCAATTTAACAAAGAGCTGTCCTAATCTTTCTTCAgttaatttatcattttgtaTATCTCTTTCTGATCAGtcacttgtttttttatctcAAagaTGCAGTTCAATAAACAATCTTAATCTATGTGGTTTAAGTAAAGCagtAACACATCAAGGTTTTAAATCActgaaagaattgaaaaatttgGTTAAGCTCAACATTAGTCGCAATATTAATGTAAATGATGAGGTCATTGAAACGATTGGAATGTCATGTAACAAAATACAatctttaaatattgaatCATGTCATCCCAATCTGACATGTGCTGGTATAAATGCACTTGCTTACTACGACAGTTTAGTTGAGCTCAATATTAGCTATATTAATGATGTATGCGATACATGCATTTCAAGTATTTCATTTATTCACAAACTTCAAACATTACTTGCTAGGTGCTGCGTTAAACTTACAAacaatgGAGTTTCAAAATGCTTACTTCATTTACAAGATTTAATGTTGTTTGACTTAAGTAGTTGCTACCTAATTGACGATTATCTTGTTCAAGAAGTAATCCAAGCAAGATGTCAAGatatagaaattattttagGGGGAACTGGGGTAACTGAAAATGGGGCAGCTGCTCTTTGTCAAAAGCTAGTCTGTTGTAAAGCAAGTCTCATTTGTTTGAGTAATGGAATGTTAAGAAATGATAGAGACCCAACCTCTGCAGCGCCATTTTTTCCTGAATCAGATGAAGAAGATGACGGTGacgaagaagaagaaaaagagtTGGAAAAGATTGTTACTATTGAAccatctttaaattttaacattaccTCTCCTGTTTCTAATATCGACGAATACGGAGAGCCTTTATGGGTAATTGAAAAACCTCAAAGTTTAACACCGATGTTGGCGCAAAATGCTATTTCAATCAAAAATGATAAGGTTTGTGAAGAGTTAGCTCTAGTTCAAAGTTCAAACGTCATCGatagttatataaatcaaaataaatcaataaagaGCGAGTCTAAAAATGACACCAAAAAAGAAAGTGACGTGGAAGATTGGGATGCTGAGGTGGACGAGCATAGGGTGTGGGAGATCCCAACAgactcatttaaaaattacgACGTTTTTGACGAAGATGAATATGCACTAATGTGTGATGATGGTTTTAACGAGCTACttggttaattttattattttaatttataggtTAACCAAAAAACAATAGACTTGTTATTAAAtcataagttgttttttatgaaaaaaatttgtttattgaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12937	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006553	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR036047	Homologous_superfamily	F-box-like domain superfamily	Interproscan
IPR032675	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR001810	Domain	F-box domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13318	UNCHARACTERIZED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0019005	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10268	FBXL2_20; F-box and leucine-rich repeat protein 2/20	-	Ubiquitin system	ko04121	deepkoala