Gene detail

Detailed information of XP_065663919.1 in Hydra vulgaris

Genomic Location: NC_088929.1:33161710...33209657
NR annotation: XP_047141587.1, mediator of RNA polymerase II transcription subunit 15 isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_065807847.1

cGACAAGTTGATCGCGTATGTAAACATGTATGAATGTAAACAAACAAcaaAGAAAAAAGACAGTCATAAAGgatataaagtaatatatcaATTGACTATTTAagatatttctatattatttaaagattttaaaagataaaaaaaagaTCATTCCATAAGTATTTAAGAACTATCTACTGATTTACATACTATCTACTGATCTTCATAAACAGATGTAATGGCTACCCAAGAATGGATGTCTCAAGATTTAAGGCAAATGATTATTCAGCAAATtgaAGACACCTACAAAAATTTTGGGAATCCAATTGGCAAAACAAGTCATGAATTGGAAGTTTCAATTATGGAAAAAGCTCAGTCTAGGgATGATTATATACGGATGGCTGCGCATTTAATTTTGGGTATTAAAGAAATGACTAACagtcAAATGGTTACAACTAATTCAAATAATCAGCTTGTTCAGCAACAAATGCAGAATCAAACATTGAGACCCAATTCTATCATGGTTCCTGTCATGACACAGCAAGTACTTCAGAATGTTCAAGAAAACCCTTCATCCCAAGTTTTGAATCAAATAAATGGTCATGGTCAAGCATTACAAGTTACATTACAAGGTGGGCAAATCATCAATCAGCAAGTTGGACAAAATTTCCAAATGCAGCAGCAAAGACAAATTCAACAGCAAACTAATCttaatacattaaatatgatAGTGACTTCGTCTGTGCCAAATgTATCATCCCAGCAAGGTCTACATGCTTCCCAACAAGAAATTCCTCAACAGCATTTCCAGTTGGTTAGTCACCATCAACTTCAACAACCTCAACAAACTCAACAACATCAGATACAGCAATCTCAGCAAACTCAACAACTTCAGCTCCAGCAATCTCAACAAACTCAACAACTTCAGCTCCAGCAATCTCAGCAAACTCAACAACTTCAACTCCAGCAAACTCAACCAACTCAACTAAGTCAACAACAACTTCAGCAACTTCACCAAATTCAAATGCACAAGAAACAGCAACAGCATCAGCAGCAACAAAAgatgcaacaacaacaaatgcaACAGCTTCAAATGCAACAAATACAGCATCAGCAGCAAATTCACCAGCAACAACTCCAAAATCTTCAAAGTGGAGTGTCCAgtcaaacaaataattttttaccacCAGCTAAAGCAACAACTTTTATGCCAATTCAACACCAAAAACAACCTCATCCATCTCCATccaatgttatttttgtttcatcacCTCAGCAAGCAACCCATCAACAACCATCACCTTCTCCAGCACTGcagTCTGCACCTTCACCAGCATTCACTAATCCTCCCTCTGTTGGTCCAGCAACAAGTCCACCTCAACAAGCAGATGATCAGACATATATAGAAAAGttaaaAGAGCTTAGCAAGTATGTTACTCCACTGACTGAAACTCTTGCTATGATGCAGAAGGGAGAAGAACACAAAAAAGGGCGTGACAAGATGGCTGGCCTTTTAGAcgttattacaaataaaaataggaGagtttctGCAGATATGTTGCATAAATGTGGATTTGCTCTTAAGAGGTTGTTCCCTGAAGCTGACACCACAAGTAGTCAAATACCTGATACAACAACTGTTGAATCTATTCCAACACCTGTAGCTAAATTGCCAAGTACGTTTCCCATTAAAGAAGTAGTAACAACAATGATAACCTCGGCACATTTAATGAGTGAGGCCCGTCAAAATATTATGCCAGGAATTATAGCACTGAATACTCCGATGATATGtcCACCTCCACTTTTTAAGCGTTCTTGTAAACGCTATCAGCAGAAAAGAAAGTCATTGTTACCTCATTCATTGCAGATGGAGGTAGCTAAacttcaacaattttttcaaataagactGGATTCAACTCAAACTGCAGACAGTGCTGGTGTTACATTAATATGTCGCctaaaaaacagTCGAGACaacatttgcatttttattcGTGTTTCAAGTAACTATCCACATGAGGAACCAAGTTTTTATGTGATGGACTCTGaagACTCAACAAAAGCGTCTCGTACTCAAAATAATACTCAGTTAAAATTATCACgtcttataaataaaagaacctTTTCTGCTATTCTTTATTCCTGGGAGAAAAGTATGGAAGAAACATGTTAACCttcaaaaatcattaatttttttttttataaaagagagTACCTATTTTGTGATATTGTTTATTGATATCTCTTGTGAATTGATTCTATATTTGactttttcaaagtaaaa

Protein

Uniprot

Uniprot term	Description
Q6NS15	Mediator of RNA polymerase II transcription subunit 15 OS=Xenopus laevis OX=8355 GN=med15 PE=1 SV=1
Q924H2	Mediator of RNA polymerase II transcription subunit 15 OS=Mus musculus OX=10090 GN=Med15 PE=1 SV=3
Q7ZVN7	Mediator of RNA polymerase II transcription subunit 15 OS=Danio rerio OX=7955 GN=med15 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21539	Med15_C	ARC105/Med15 mediator subunit C-terminal domain	Domain	Interproscan
PF09606	Med15	ARC105/Med15 mediator subunit N-terminal KIX domain	Domain	Interproscan
PF21538	Med15_M	ARC105/Med15 mediator subunit central domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048386	Domain	ARC105/Med15 mediator subunit, C-terminal domain	Interproscan
IPR036529	Homologous_superfamily	Coactivator CBP, KIX domain superfamily	Interproscan
IPR019087	Domain	Mediator of RNA polymerase II transcription subunit 15, N-terminal	Interproscan
IPR048385	Domain	ARC105/Med15 mediator subunit, central domain	Interproscan

PANTHER

PANTHER term	Description	Source
-	-	-

Gene Ontology

GO terms	Category	Description	Source
GO:0003712	Molecular Function	transcription coregulator activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan