Gene detail

Detailed information of XP_065664038.1 in Hydra vulgaris

Genomic Location: NC_088929.1:38653883...38658279
NR annotation: XP_047142088.1, uncharacterized protein LOC101237261 isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_065807966.1

CTACTTAAGCGCTTTGAAAATGTCTTATGATTATCAAGAAAAACTATCAAAAGAGGCTGCTGAACGTTACCAAAATAAGTTAGATTTAATAGGTCTAAAAAAGTGCCTTTATAAATTTGCATCAGATGAGTGGAAAGATGATCCAACTGAATGGCCTGCTCTTGCCTATCATCATGTTTatcaatttctaataaaaagtcctaggATATATTCTAGTGAAGCCATggaaaactttaaatcattagatgcttacaaattttttattgatggaTGGGTTCAAACTATAAAACATCAGAAACTCTCTGGTGGAGCTTACATTCTCCATAGCGAAGTCAGACCATCATTCAGGACAACTGAAACACCTCATCAACCATGGGTTGCTATTGAAAATTTGGGGAAAGTATTGGCAGGACATTGTGATTGTATGGCTGGGCTTGGTGAAACATGTTCCCATGTAGCTGCAGTTCTTTTCAAGATTGAAACAGCAAACAGGATTGGAATGACTCATAATGTATCAACTGATCTTCCATGCAAATGGAATCAAAACTTCACAAAAAACATAAACCCATCTCcagtttctaaaataaatttgtacagCAGTAAAGCAAAAGAGAAATTGAATTTATCAAGAAAATGTTATGATGTTGAAGTGACACATAATGACGAAATGGATTTCATTAAGAGTTTGTCAACAATTAAAACTAGACCTGTAGTTTTGCATCTATTTCCTCAATATGATGGACCATTTATTGAACATAAGGTTTTTGTACCAAAGCAGTTGCCTTCAAGCTTAAGAGAATTTTACTCTCCAAAATACATTGATCTTACTGCTGAAGAGTTAAATAAGATATGTACTGAGAAAAAGCAATCACTAACTCTTTCTGcagatcaaattttttatattgaggAGGCAACAAGAAACCAAGCACAGTGTGAAGCATGGTGTCAGCAAAGAGCTGGTAGATTAACTGGATCTTTACTAAGTGAAATCTACAAACATGCTATAAATGATACAACTTCATCatcacttataaaaaatatttgcaatccCTCGTCAATCAATCTTCATGCTCCTCCAATTAAATGGGGTAAAGAGAATGAAAAATTGGCTTTCCTTTTATACCAATCTGTAAACTTGGATGGAGTCATTGGCAACCAGCAGATTAGCTTGACAGATATTTCTTTGCATGAGGTATTTCAGGTTAAAGATGTTGGTTTTTGCATTGATTCCAATATGCCATGGATAGGAGCATCTCCTGATGGGATAGTGACATGTGATTGTTGTGGCTCTGGAGTGCTTGAAATAAAGTGTCCCTACTCTTTGAGAGAAAAGTCACTTTTAACAGAAATTAAATCTGGTTCCTTTTATGTATTTGAAGATAATAAcctatatttcttaaaaaaagaccataaatattattttcaagttCAATTAGAAATCAGAGTAACTCTAAGTCAATATTGTGATTTTATGATTTGGACTCCAACAGAGTTTTTAGTGATTCGAATTAAACCAGAGgttgattttattgatgaagttcttaaaaaagttaCCATGTTTTGGGAACAGGAAATCTTACCAGAGCTTTTAACACAAAGAATTGAAacaactaaattgaaaaaacctaataaaaaatgttcatcccctaaaaaacaaacattatatTGTATTTGTAAAAGACCATATTGTTTGTCAGATGATATGGTAGCTTGTGATGATTGCGACAATTGGTTCCATCCATCATGTATAGGCCTCAAAAaactacctaaaaaaaaagcctGGTATTGTAAAGAGTGTCGAAAGAAGAAATAGAACAGacCCCTACCATGTTGTTACTTAACCTGTTAGTCATAATATGTGTTCTGGTTGGAGCTCTAGCACAGTGTTGGCTCACTTGTAAGTATATTTGGATTCTAATTGGACCTCTGATGAGGTGTTGACTAACCGGTAAGTGGTTATGTGTATATTTGTGTTTTGTGTcgacctctggcgcggtgttggcTCACTCGTTAGTCattatgtgtgtttgtgttctgtgtcgacctctggcgcggtgttgactcactcggTTGTTCTTAGGTCACAAAAACAATCTCACAAAAGTTTCTGCTGTTGTCACTGGTTTTGGAGAGCACCTTCGTGAATGAAGTTAAAAAGTCTTTAATGTTAAGCATTttctaaaagccaagacaaagCCAAGTCGTTAATCCTCATAccatttgctaaaaactttataaatattgttacaatGTTATAGttcaaattgttataattagtaattttgatcatttcattattatactgtgaaaaatattttttatttataacatttattccacatatatttaaaatatgcgGAAAAGATATTACTCTGTggaaaattttaagcaaaatatagaatttttaaatatgattagaAA

Protein

Uniprot

Uniprot term	Description
Q9FEN9	Chromatin remodeling protein SHL OS=Arabidopsis thaliana OX=3702 GN=SHL PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09588	YqaJ	YqaJ-like viral recombinase domain	Domain	Interproscan
PF00628	PHD	PHD-finger	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007527	Domain	Zinc finger, SWIM-type	Interproscan
IPR019786	Conserved_site	Zinc finger, PHD-type, conserved site	Interproscan
IPR011011	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR019080	Domain	YqaJ viral recombinase	Interproscan
IPR011604	Homologous_superfamily	PD-(D/E)XK endonuclease-like domain superfamily	Interproscan
IPR001965	Domain	Zinc finger, PHD-type	Interproscan
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR011335	Homologous_superfamily	Restriction endonuclease type II-like	Interproscan
IPR019787	Domain	Zinc finger, PHD-finger	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47526	ATP-DEPENDENT DNA HELICASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0008270	Molecular Function	zinc ion binding	Interproscan