Gene detail

Detailed information of XP_065664356.1 in Hydra vulgaris

Genomic Location: NC_088929.1:51894029...51942819
NR annotation: XP_047141662.1, ras and EF-hand domain-containing protein-like isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC100202249

ATGTCTATTCACTCCTTTGAAGAAGAGGAACAAGAAGAACAAGAAGGTTTTTTAAATGATTATTTTGACAATAACGCTAATAACAATACATCAAGAAAATTTGAACATCGCATGTTTTCTTGTGCTTCATGTATATTATTTGATTCAAAAAACCCTATTATAGTGACTGAGACAGACGGATTTCCCATTCGCAGAGTGGCTTCTTGTTCAGTATGTTGTTGGGATTTTGATGATAACGTTTTGTGTGTTCCTGATATTCAAAGAAGTTTGTCATCAGACTCAAGAGCAACATCATCTTCTTCAGAAGATTCTTTTATAACATCAAATACATCCAAACTTAAGAATGTTGAATGTAACTCTCTTAAATCTGACTTTAAGAGTTTTGAAAAAAAAGTTAAAGAAAATGATACTTTAAAAACTAAATCAAGTAGTGACATTTCAGACTTAACTGGCAGTTTTTCTCTGCCATCATTAAGACGGACAGATTCTTATAACAGTGCTATTAATGTTACAGAAAATGATTCATTAAAAAATGATTTTAAAAATGACTTTAGGAAAAAAGAAATTCGTATAAATTCTTCTCACCGTAAAAGTAAGCACAAAAGAAGCTTCATTGAAAAAGCTTTTAGGCGAAGTAAAACTCGTACTCCACCTGATGGAATTGAAGTGTCTTGCGTAGTCGTAGATGATCACTTAAAATCCAATAATTTTGTTTCCAGTGAAAATTGCAAAATATCTGATTGTGAAATACGTCAGCCAACCATTAGCATTAATGCAACTAAAGAACTTGATGAAATATTTGGAAAAATTACAAAAGTTTCTGAATTAAAAGCAAAGGAAGAAGAAGAAAATGACTATTTCAGCTGTTCAGATCAAGAAAATTCTGATAACGAAAAAAAAAGTAAACAGGTTAGTTTATTAAAGCGACTTTCTCCTAATAGATCAGTTAAAAAGTTACCAAGATCGCGTAGTCTAAACAATCTGTCAAAAAATTGTTTACCTTCTAGTGGATTTATAAGAACACAGTCATCTATGGACTTATCCACAGTTATGGATTATGACTTTATGTATGATGGTTTAGAAGCTAAAGAAAGTGAAAACTGGAATTCATTTTTAAAGAAGATCAGTGATATTTCTTTATTTGAAAAGAACATTTCTCTTCGACATTTATGGCAAAAACTAGTTTCCCATCAAGACTTGACTTCACTATTTGAAGATTCTCTCAGATGTATAGTAGAAGATATGGAAAAGGTGCATAAAAAATACGAAGGATTAGAAACACTTTTTGCAACTAAGTTGGAACAAGAAGAGAAAGAAAAAGCCAAAATATATGACGATGTTGAAATAGTTCTTCAGCAAGAAAGACAATGTGCTCATGAAAAGATTACATATATGGAGACACAGCTTCGATCAGAGCATCAACGTGCAATTGAATCAAGGGATTTAGAAATACAAAATATTTTATGTCTGAACAATGACTTGTCTTTAAAGAATACAAAGTATAAAGAAGAATATGAACTTCTAAAATCGACATTGCAACTGATGGAGCAGCAAATTAACCAATGTTTGAAAAGCGAAGAAGAATTGAGGAATGAGAATGCTATACTTATTCAGGAGAAAATTTTTCTTATTCAAAAAGCTGAACAAACAGAAGAAATTGTGAAAAACCTTAAAGAAAGTGTTGTCTTGATGCAAAAAGATGTAGAAAATGAAAAAAATAAAAATAAAACTTTGTTACGACAGCATAATGATATGTTAGAGGAAAAATTGCATTTGGATTCAAAAATTGACACCTTAACTGCAGCTTTTACCAATCTTAAAAAGCAAAATGATTACCTCATTACCAGTCTCCATGTTAAATGTCCAACAATAGAACTTTTTAATGTACATAGTTTGAACAATAAAAATTATGAATTCGATGAATTTACCAAACAAGATGTAATCAGTACTCTGCAGTCTTCCTATTCACTTAAAAACAAAGCAAAATTTTTACACCAAGATGCACAAAAAAAACTTTTCTCAAAAACAAAAAATAAAATTAATAAGTTAAATATAAATAATAAAAATGTTTATTCTCCACTTCCAATTAAAAAAGTTCTTAACACAGATGACTGGCCATTATCTCCACCTAAACTGTCTGATGAAAACAATAGTAGTCAAAATGAGTTGCATAAAAGTGAGTTGCTAAGTTCATTTGATAGTCATCATCCAACTGAGAGTTACATTCGGTCTTCCTTCAAAAACAAAATCAATAAACAACTCTCCTATAAAAACAATGAACTTAATACAAAGTTGTTTACAAATGGATGTTCTGCAAAAACTTCATCACTTCGCTTTGCTGAATGTGAAAAAAATACATATAAAATAATATTCATCGGAGATTCTAACGTAGGAAAAACAAGTTTTATTCGCCGAGTTTGTTTCGGAAAATTTCGTGCTTCAAGAGAAGAAACCCGTATTAGTGATTTTTCTACTATTTGTGTCAATTCAGAGGGAAAAAATATTACTTTAAACTTATGGGACACTTTGGGACAGGAAAGGTTCAACAGTATTCCACCATCTTATTTTCGAAGGTCTGACATTGTAGTACTTATGTATGATGTTACAGAAGATACTTCATTTTTTAGTGTAAAGAACTGGATACGAAAAATTCATGATTTAACAGATGAAAACGTGTTTCTAATGATAATTGCTAACAAAATTGATCTCGATGAGAAAATTTTATGTGAAAAAGGAAGAGACCTCGCAAAGGATCACGACGCTATTTTCATTGAAACTAGTGCTAAAACTGGAGAGAATATCGATTTGTTTTGTCAGATGGTCTTGAGTACGTTATTAGACCGAGAAGATACTGCTTTAATACGCAAGGATTTTACCCACAGTTTATGCAACTTAAGTTACTCAAAACGTACACAAACTAGTTGCTGTTCGTAG

Transcript

rna-XM_065808284.1

GTTGTTTTTCCGGTTCAGTGTGGATAGGGGTTGAGACCGCTCTTCGACACTTCTGAAGTCGTATCCAATGCCaacaaaacaaagcaaaaaataaaaactaataatagtaATTGTGAGTCCGATAGTTGAGATTTGAATTATTAAAGGTTGAGTTTTGAAATACCTTAGgtattaagtatttatattttaaatgtaaattgtaCCGGTTAGATTGCGAAGATGTACATGTGAATTACGttcgtaAACAACAAAGTAAAGGAAGATGTCTATTCACTCCTTTGAAGAAGAGGAACAAGAAGAACAAgaaggttttttaaatgattattttgacAATAACGCTAATAACAATACATCAAGAAAATTTGAACATCGCATGTTTTCTTGTGCTTCATGTATATTATTTGATTCAAAAAACCCTATTATAGTGACTGAGACAGACGGATTTCCCATTCGCAGAGTGGCTTCTTGTTCAGTATGTTGTTGGGATTTTGATGATAACGTTTTGTGTGTTCCTGATATTCAAAGAAGTTTGTCATCAGACTCAAGAGCAACATCATCTTCTTCAGAAGATTCTTTTATAACATCAAATACATCCAAACTTAAGAATGTTGAATGTAACTCTCTTAAATCTGACtttaagagttttgaaaaaaaagttaaagaaaatgatactttaaaaactaaatcaaGTAGTGACATTTCAGACTTAACTGGCAGTTTTTCTCTGCCATCATTAAGACGGACAGATTCTTATAACAGTGCTATTAATGTTACAGAAAAtgattcattaaaaaatgattttaaaaatgactttaggAAAAAAGAAATTCGTATAAATTCTTCTCACCGTAAAAGTAAGCACAAAAGAAGCTTCATTGAAAAAGCTTTTAGGCGAAGTAAAACTCGTACTCCACCTGATGGAATTGAAGTGTCTTGCGTAGTCGTAGATGATCACTTAAAATCCAATAATTTTGTTTCCAgtgaaaattgcaaaatatCTGATTGTGAAATACGTCAGCCAACCATTAGCATTAATGCAACTAAAGAACTTGAtgaaatatttggaaaaattacaaaagtttctGAATTAAAAGCAAAGGAAGAAGAAGAAAATGACTATTTCAGCTGTTCAGATCAAGAAAATTCtgataacgaaaaaaaaagtaaacaggtTAGTTTATTAAAGCGACTTTCTCCTAATAGATCAGTTAAAAAGTTACCAAGATCGCGTAGTCTAAACAATCtgtcaaaaaattgtttaccttCTAGTGGATTTATAAGAACACAGTCATCTATGGACTTATCCACAGTTATGGATTATGACTTTATGTATGATGGTTTAGAAGCTAAAGAAAGTGAAAACTGGAATTCATTTTTAAAGAAGATCAGTgatatttctttatttgaaaaGAACATTTCTCTTCGACATTTATGGCAAAAACTAGTTTCCCATCAAGACTTGACTTCACTATTTGAAGATTCTCTCAGATGTATAGTAGAAGATATGGAAAAGGTGCATAAAAAATACGAAGGATTAGAAACACTTTTTGCAACtaaGTTGGAACAAGAAGAGAAAGAAAAAGCCAAAATATATGACGATGTTGAAATAGTTCTTCAGCAAGAAAGACAATGTGCTCATgaaaagATTACATATATGGAGACACAGCTTCGATCAGAGCATCAACGTGCAATTGAATCAAGGGatttagaaatacaaaatattttatgtctGAACAATGACTTGTCTTTAAAGAATACAAAGTATAAAGAAGAATATGAACTTCTAAAATCGACATTGCAActgATGGAGCAGCAAATTAACCAATGTTTGAAAAGCGAAGAAGAATTGAGGAATGAGAATGCTATACTTATTCAGgagaaaatttttcttattcaaaAAGCTGAACAAACAGAAGAAATTGTGAAAAACCTTAAAGAAAGTGTTGTCTTGATGCaaaaagatgtagaaaatgaaaaaaataaaaataaaactttgtTACGACAGCATAATGATATGTTAGAGGAAAAATTGCATTTGGATTCAAAAATTGACACCTTAACTGCAGCTTTTACCAATCttaaaaagcaaaatgattACCTCATTACCAGTCTCCATGTTAAATGTCCAACAATAGAACTTTTTAATGTACATagtttgaacaataaaaattatgaattcgATGAATTTACCAAACAAGATGTAATCAGTACTCTGCAGTCTTCCTATTCActtaaaaacaaagcaaaatttttacaccaagatgcacaaaaaaaacttttctcaaaaacaaaaaataaaattaataagttaaatataaataataaaaatgtttattctcCACttccaattaaaaaagttcttaacaCAGATGACTGGCCATTATCTCCACCTAAACTGTCTGATGAAAACAATAGTAGTCAAAATGAGTTGCATAAAAGTGAGTTGCTAAGTTCATTTGATAGTCATCATCCAACTGAGAGTTACATTCGGTCttccttcaaaaacaaaatcaataaacaacTCTCCTATAAAAACAATGAACTTAATACAAAGTTGTTTACAAATGGATGTTCTGCAAAAACTTCATCACTTCGCTTTGCTGAATgtgaaaaaaatacatataaaataatattcatcGGAGATTCTAACGTaggaaaaacaagttttattcgCCGAGTTTGTTTCGGAAAATTTCGTGCTTCAAGAGAAGAAACCCGTATTAGTGATTTTTCTACTATTTGTGTCAATTCAGAgggaaaaaatattactttaaactTATGGGACACTTTGGGACAGGAAAGGTTCAACAGTATTCCACCATCTTATTTTCGAAGGTCTGACATTGTAGTACTTATGTATGATGTTACAGAAGATACTTCATTTTTTAGTGTAAAGAACTGGATACGAAAAATTCATgatttaaCAGATGAAAACGTGTTTCTAATGATAATTGCTAACAAAATTGATCTCGATGAGAAAATTTTATGTGAAAAAGGAAGAGACCTCGCAAAGGATCACGACGCTATTTTCATTGAAACTAGTGCTAAAACTGGAGAGAATATCGATTTGTTTTGTCAGATGGTCTTGAGtaCGTTATTAGACCGAGAAGATACTGCTTTAATACGCAAGGATTTTACCCACAGTTTATGCAACTTAAGTTACTCAAAACGTACACAAACTAGTTGCTGTTCGtagtcttttttttctatatatt

Protein

Uniprot

Uniprot term	Description
Q55FK2	Ras-related protein Rab-6 OS=Dictyostelium discoideum OX=44689 GN=rab6 PE=3 SV=1
Q9LFT9	Ras-related protein RABH1e OS=Arabidopsis thaliana OX=3702 GN=RABH1E PE=2 SV=1
Q9LV79	Ras-related protein RABH1a OS=Arabidopsis thaliana OX=3702 GN=RABH1A PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806	Family	Small GTPase	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR050227	Family	Ras-related protein Rab	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47977	RAS-RELATED PROTEIN RAB	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17199	RASEF, RAB45; Ras and EF-hand domain-containing protein	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala