Gene detail

Detailed information of XP_065664973.1 in Hydra vulgaris

Genomic Location: NC_088930.1:42639883...42661670
NR annotation: XP_047137002.1, uncharacterized protein LOC100198319 isoform X2 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC100198319

ATGGCCGACTGGAATGATTATTTCGCTAAATCTAGGCCTCCCTCAAATCTCGATGAGGCTAAAAGAACAATACAAGATTTTGCAGTAAAACACAGACAGCTTGGCAGGCATATTGTTTTAGTTACCAGTGGTGGAACTACTGTACCCATTGAAAGTAATACCGTCAGATTTCTCGATAACTTTAGTCAAGGAACAAGAGGAGCTTGTTCTGCTGAATATTTTCTACTACATGGTTATGCAGTGATCTTTTTACATAGACAGAGGTCTTATGAACCTTTTTGTCGTCATTTCGAAGGACATAATGCTTTGGACTTATTAGAGCCACAACTTGATTCAGCTGGAAATTACCATGTTGCTGTGGATGAGCAAAGAGCTCCTGGTTTAGCTGAAGTAGTTAGAAGATATAAAGAGCTTGAGACTGATGTAAATATTATATCTCGTAAAGCCAGAGAAGCACTTCAGAAATACAATCATCAGGTTGTCATTGCAAATATTTTACAAACACGACGAAAAACTGTTGTGCTTGTTACACCATATGATGAAACTGCAATTTGGATGAGTGATCATGAATTAGATTTAGGCAAAGAAATAGAAGAAAAAATTGTGAATGAACTCGCCAGACGTCATGTTCAAATAATTTCAGCTGTCGATGCTACTCAACAACAAAATTCTTCTATTGTGACATCTAATTTTTCTTCTCAGTATCAGACTCACTTGCCAAATACATCACTTAACTCGGTTTTGCCAGGATTAGCACCTATCAATGTTTATAATACAATTAATACAAAAGCTGGTGTCCCAAACGTTTTACTTCATTTAAAAAACTCTGGAGATGCAGACATTAATGCAGAAATTTTAGGAACTAATCTTCTAAAACGCTCCGTATCAGTTAAAGAGGAAACAAATGGTTTAAGTACAGAAATGCAAAGGTTTATCTTTGATTTCAAATCTAGACGAGTAAATCTTGGTTACACACAAGATGATGTAGGTAGAGAACTTTCCGCACTTAATGGACCAACATACAGTCAATCTTTTATATCAAGATTTGAAGGTAAGCAGTTAGGAATGAAAGCAGCCGAACGTATGCGACCTATTCTAGAAAGTTGGATTCGATCGAAAGAAGATGAACATAACCGTGGTAATAAATTTTCAAAAAAGAGACGTAAAAGGACAAGTTTTTCGCCAGAATTTATAAACACATTAAATGAATATTTTGAAAAAAATCCAAAGCCTTCCGTTGAAGAAATGGAAGAAATAGCATATAAAATTAATCTTGATCTAAATACAGTCAAGGTTTGGTTTTGTAATAAAAAACAAAGTTTAAAACGGTCTACGTCTCATCCAAGTTCTTTGCGTCATGAATTAGATGGAAAACGAAAGCGAAAAACGGACGCAGATATTTCTGATGTGCTACCGTTTGCTAGCCAAGGAACTATAAAAACTTATCTACCGGTATCGACCCCTACTGGCACTGTTAATCTTCCATTTTTTATAAATCAAGACGATAACAGTATATCTATTGTATCTGGAACATCTAACCAAGCTGGTCATCACAATCCAAATGGGGTACCACAGCAATTAGTTCATCTTTCTCAACTTCCCATACTTACATCAATGTCTGTAATCAATAACGGGCTTTCTTCAACCAATACAAGTGACGTTAACGCTACACATATACTTTCTAATGCCCGTCTGCTTTCTTCTGGATCTGTTATACAACTACAGGATGGTACTTTAGCCACTCAAACACATATGCAATCTATCAACAACGCTACCAATTTAAATGACGGTAGTGTTATTTTAACAGGCAGTATATCGCAGAATACAAATTCGCTCTCTTCACCGACTCTAAGCTCAAATCAACATCATAATGAACTGCATCTTTTGACCAGTTCTTCGCCATCAATCTCTGTTTCTTCAGTTCATAATGATTCAGTAAATGATGCGAGTGAACATAACGATAACGGCATAACTTTAGACAATCGACACAGTTTAAAACTTAAACGGGATGTGAATAAAACTGCAAGGCTTTTACCTCGACTTCAAACAGAAAAAATAAATAACGAAGTGTCTTGA

Transcript

rna-XM_065808901.1

aTCTTAGAATGcgcaataacaaaaaagtatgTCAGTTAACGGAGTTGAaagaacatttataaaaatattgaaagcattaagttaaaaagaagaaaatggcCGACTGGAATGATTATTTCGCTAAATCTAGGCCTCCCTCAAATCTCGATGAGGCTAAAAGAACAATACAAGATTTTGCAGTAAAACACAGACAGCTTGGCAGGCATATTGTTTTAGTTACCagTGGTGGAACTACTGTACCCATTGAAAGTAATACCGTCAGATTTCTCGATAACTTTAGTCAAGGAACAAGAGGAGCTTGTTCTGCTGAATATTTTCTACTACATGGTTATGCAGTGATCTTTTTACATAGACAGAGGTCTTATGAACCTTTTTGTCGTCATTTCGAAGGACATAATGCTTTGGACTTATTAGAGCCACAACTTGATTCAGCTGGAAATTACCATGTTGCtgTGGATGAGCAAAGAGCTCCTGGTTTAGCTGAAGTAGTTAGAAGATATAAAGAGcTTGAGACTgatgtaaatattatatctcGTAAAGCCAGAGAAGCACTTCAGAAATACAATCAtcaggttgtcattgcaaatattttacaaacacgACGAAAAACTGTTGTGCTTGTTACACCATATGATGAAACTGCAATTTGGATGAGTGATCATGAATTAGATTTAGGCaaagaaatagaagaaaaaattgtGAATGAACTCGCCAGACGTCATGTTCAAATAATTTCAgCTGTCGATGCTACTCAACAACAAAATTCTTCTATTGTGACATCTAATTTTTCTTCTCAGTATCAGACTCACTTGCCAAATACATCACTTAACTCGGTTTTGCCAGGATTAGCACCTATCAATGtttataatacaattaataCAAAAGCTGGTGTCCCAAAcgttttacttcatttaaaaaactctggaGATGCAGACATTAATGCAGAAATTTTAGGAACTAATCTTCTAAAACGCTCCGTATCAGTTAAAGAGGAAACAAATGGTTTAAGTACAGAAATGCAAAGGTTTATCTTTGATTTCAAATCTAGACGAGTAAATCTTGGTTACACACAAGATGATGTAGGTAGAGAACTTTCCGCACTTAATGGACCAACATACAGTCAATCTTTTATATCAAGatttgAAGGTAAGCAGTTAGGAATGAAAGCAGCCGAACGTATGCGACCTATTCTAGAAAGTTGGATTCGATCGAAAGAAGATGAACATAACCGtggtaataaattttcaaaaaagagaCGTAAAAGGACAAGTTTTTCGCCAGAATTTATAAACacattaaatgaatattttgaaaaaaatccaaAGCCTTCCGTTGAAGAAATGGAAGAAATAGCATATAAAATTAATCTTGATCTAAATACAGTCAAGGTTtggttttgtaataaaaaacaaagtttaaaacgGTCTACGTCTCATCCAAGTTCTTTGCGTCATGAATTAGATGGAAAACGAAAGCGAAAAACGGACGCAGATATTTCTGATGTGCTACCGTTTGCTAGCCAAGGaactataaaaacttatctaccGGTATCGACCCCTACTGGCACTGTTAATcttccattttttataaatcaagaCGATAACAGTATATCTATTGTATCTGGAACATCTAACCAAGCTGGTCATCACAATCCAAATGGGGTACCACAGCAATTAGTTCATCTTTCTCAACTTCCCATACTTACATCAATGTCTGTAATCAATAACGGGCTTTCTTCAACCAATACAAGTGACGTTAACGCTACACATATACTTTCTAATGCCCGTCTGCTTTCTTCTGGATCTGTTATACAACTACAGGATGGTACTTTAGCCACTCAAACACATATGCAATCTATCAACAACGCTACCAATTTAAATGACGGTAGTGTTATTTTAACAGGCAGTATATCGCAGAATACAAATTCGCTCTCTTCACCGACTCTAAGCTCAAATCAACATCATAATGAACTGCATCTTTTGACCAGTTCTTCGCCATCAATCTCTGTTTCTTCAGTTCATAATGATTCAGTAAATGATGCGAGTGAACATAACGATAACGGCATAACTTTAGACAATCGACACAGTTTAAAACTTAAACGGGATGTGAATAAAACTGCAAGGCTTTTACCTCGACttcaaacagaaaaaataaataacgaaGTGTCTTGATTGGTATAGGttctaaaaagttattaataggAATAGTGTCTTTTCAAATCTTCAAACATTGAAAGTTTTTAGTTATTCGCTAATATAATCAactaagttatattttaaagcatCCATCATCATGTTGCTTATGAGCTTTTTTTCTGACAAACCATTTATAGATTCGTGTCGGTATTTTGTTAGAATGTCCTTTTGTTGAGcccttataaaataaaatattgtccatttagaatttaatttaaaaagataaaaagacttGACTTAAAGGTACTTAAAAA

Protein

Uniprot

Gene family

Uniprot term	Description
P56223	POU domain, class 6, transcription factor 1 OS=Rattus norvegicus OX=10116 GN=Pou6f1 PE=2 SV=1
Q07916	POU domain, class 6, transcription factor 1 OS=Mus musculus OX=10090 GN=Pou6f1 PE=1 SV=2
Q14863	POU domain, class 6, transcription factor 1 OS=Homo sapiens OX=9606 GN=POU6F1 PE=1 SV=2

Gene family	Subfamily
Transcription Factors Family	Homeobox
Transcription Factors Family	Pou

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00157	Pou	Pou domain - N-terminal to homeobox domain	Domain	Interproscan
PF00046	Homeodomain	Homeodomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001356	Domain	Homeobox domain	Interproscan
IPR000327	Domain	POU-specific domain	Interproscan
IPR050255	Family	POU domain transcription factor	Interproscan
IPR017970	Conserved_site	Homeobox, conserved site	Interproscan
IPR035929	Homologous_superfamily	CoaB-like superfamily	Interproscan
IPR010982	Homologous_superfamily	Lambda repressor-like, DNA-binding domain superfamily	Interproscan
IPR013847	Domain	POU domain	Interproscan
IPR009057	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11636	POU DOMAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan