Detailed information of XP_065666012.1 in Hydra vulgaris

Genomic Location: NC_088930.1:6795663...6841947
NR annotation: XP_047135994.1, 116 kDa U5 small nuclear ribonucleoprotein component [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
Q5F3X4116 kDa U5 small nuclear ribonucleoprotein component OS=Gallus gallus OX=9031 GN=EFTUD2 PE=2 SV=1
Q15029116 kDa U5 small nuclear ribonucleoprotein component OS=Homo sapiens OX=9606 GN=EFTUD2 PE=1 SV=1
A4FUD3116 kDa U5 small nuclear ribonucleoprotein component OS=Bos taurus OX=9913 GN=EFTUD2 PE=2 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF03764EFG_IVElongation factor G, domain IVDomainInterproscan
PF00009GTP_EFTUElongation factor Tu GTP binding domainDomainInterproscan
PF00679EFG_CElongation factor G C-terminusDomainInterproscan
PF14492EFG_IIIElongation Factor G, domain IIIDomainInterproscan
PF16004EFTUD2116 kDa U5 small nuclear ribonucleoprotein component N-terminusFamilyInterproscan
PF03144GTP_EFTU_D2Elongation factor Tu domain 2DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR005517DomainTranslation elongation factor EFG/EF2, domain IVInterproscan
IPR000795DomainTranslational (tr)-type GTP-binding domainInterproscan
IPR044121DomainSnu114, GTP-binding domainInterproscan
IPR000640DomainElongation factor EFG, domain V-likeInterproscan
IPR014721Homologous_superfamilySmall ribosomal subunit protein uS5 domain 2-type fold, subgroupInterproscan
IPR027417Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR035655Domain116kDa U5 small nuclear ribonucleoprotein component, C-terminalInterproscan
IPR035647Homologous_superfamilyEF-G domain III/V-likeInterproscan
IPR009000Homologous_superfamilyTranslation protein, beta-barrel domain superfamilyInterproscan
IPR020568Homologous_superfamilyRibosomal protein uS5 domain 2-type superfamilyInterproscan
IPR041095DomainElongation Factor G, domain IIInterproscan
IPR031950Domain116kDa U5 small nuclear ribonucleoprotein component, N-terminalInterproscan
IPR031157Conserved_siteTr-type G domain, conserved siteInterproscan
IPR004161DomainTranslation elongation factor EFTu-like, domain 2Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR42908TRANSLATION ELONGATION FACTOR-RELATEDInterproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0005525Molecular FunctionGTP bindingInterproscan
GO:0003924Molecular FunctionGTPase activityInterproscan
GO:0000398Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0005829Cellular ComponentcytosolInterproscan
GO:0030623Molecular FunctionU5 snRNA bindingInterproscan
GO:0046540Cellular ComponentU4/U6 x U5 tri-snRNP complexInterproscan
GO:0071007Cellular ComponentU2-type catalytic step 2 spliceosomeInterproscan
GO:1990904Cellular Componentribonucleoprotein complexInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K12852EFTUD2; 116 kDa U5 small nuclear ribonucleoprotein component-Spliceosomeko03041deepkoala

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