Gene detail

Detailed information of XP_065666746.1 in Hydra vulgaris

Genomic Location: NC_088930.1:28168720...28230573
NR annotation: XP_012554081.2, ankyrin repeat and zinc finger domain-containing protein 1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC105843360

ATGAGTGAGAAGTCCCATAAAAGTCTGTTGCCGACGAACCATGTAATTAGTGTTTTTGAAGACACTAATCATTTTTTTAAAAATTGTATAAGTTATACTGGCCCAAAAGATCACTCTGCTTTATGTTCTTCGGAAGAATCAGATCATAAGATTGTTGAAAATGACCATCAGGCTGAATCTTTTAAGTGTACAATATGCAATATTTATTTTGAAAATAGAGATGATCAGAGGCAACACTATTTCTCAGATTTGCATAGAGTGAATGCTCATCGTAAAGCATCCTTAAAACCCCCTTTAACAGAAGAAGAGTTTTTAGATTACATAGACGAAAGTTCTAATTCTGAATCAGAATCAGATGATATTTCTCCATCATGTGAAAAATTAAATGAAAATATAGAGTTCCAGCCAAGAAACAGAGGAAATTTTTTTTCAAATCACCCTTTAAAGACATTCTATGTTACAGAACAAAAAATTTTATTTTCAATTTACAAAAATCTGATAATTCAGACTGAAAATTTTGAATGTTTGGACTTTGGATCAGTATGGGTATATTTATTGTTATGTGCTGGTCATTTTGCTGGAGCTGTTTTTAATAAAAATGAAACAGTTGCTCACAAGACATTTCATCGATATGTTGTTCGCGCAAAGAGTGGTACAGCTCAAAGTGTTTGTGATAATCAAGGTGGAAATGCTCCAAAATCTGCAGGATCTTCATTAAGAAGATACAATGAAGCAGCTCTTAAAAAAGAAATACAAGAGTTGTTGTTGACTTGGTCAGATCATATCAATGCATCAAATAGGATATTTTATAAATGTTCCACATATGGAATGGGAACTCTATTTGGGAAAAAAACAAATATTTCAAAAGATGATCGACGTCTGTGTAAAATATCACTACCAACACAGAGACCAACTTTAAATGAAATTAAACGTTTGCATTTACAATATTCAAGGATATATATACATGGTTCGTTTGGTGAAATTGAAGAAGATATGAAAAAAGTAAAAGAACAAGAAAATAAAGAAAGATTAAAAGATGATGTTGAATCCTTAAAGCAGGAATTAGAACAATCAAATTTAAAAGAGAATACCCAATTTATTGTTCAAGCAGCTGAAGAGAAGTTTTCTTCATCAGAAAGAGACACAAAACATGCTCAGATATATGGTACTAAAAACTCTCCTATAATTGAGAAACAAGTAATTGCATCTAGACATGACAGCAAAGAACGAAATTCATCAGATTATGAAAATTATGAAAACAAGAAAATACACAATGATGGTAAAAAGGAAGAAAATAATGATGATGCAGTTTGGATGTGGAATCCAATATATAAATGGTGTTCTCAAGGCAATCTGAATGAACTGAAAAAATTTTTTGAAACAATCTCTGACAGTAAGAGTGAGCTGCATCAGTCTTTTCTTCAAGATAACAAAAGCAGTGAACATCATTCTAATCTCCAATATGACAGTGAAAGTAAGGAATACCAATCTTGTCCCCAAAATGACATTGTTAATAAAGAGTACCAAAACTCCCAAGATGGACAAAATAGTGAAAATAAAAAGTTGTGTTTTTATCCACATATAAACTATCTTTCGGTTTCTAAAAACAGTACTTTGCTTCAACGAGCGATTGTTACTGGCAGTCGAGAAATAGTAGCACTACTCCTTGATCTAGGTGCAGATCCATCCATAAGTAACACAATAGGTCAACTCCCATATGACCTTGCTTCACAAAACATTCGTAGAGAATTTCGAAGGTTTCGATATGATTATCCAAACAAATATGATTATGCAAAAGCTAAGATTGGCACTCCACTGACTAAAGTTGAAGAAGAAAGAAAAAAAGAAACAGATATTAAAAAGAAAAAACTTCAAAATAAAGCAAGAAAAGAAAAACTAAAATTGCAAAAAATGCAAGAAGAAGATTTAAAAAAAGTTGAGCAAGAGAAACAAGTATTTGAAAATCTTTCTGATCGAGAAAAAAGAGCAGTAATGGCCGAAAGAAGAATTGCAACACAGCATACAACTTCCTCTAGGTGCGCACGTTGTCGAGCAGCGATAGATGACAAAAACGCATTCGAAAAGTACGGTTTTAAATATTGCTGTATGAAATGTGTAAATGAACATAAATCTTTTATAGGAAAGTAA

Transcript

rna-XM_065810674.1

GTAATTACATTAGGACCTTCAGAAGTACGCATGCGTTCTTCTTAGAatcgaaaatttttttatcacaacaataatttattaatcaattatttttaaatagtatacaAGATGAGTGAGAAGTCCCATAAAAGTCTGTTGCCGACGAACCATGTAATTAGTGTTTTTGAAGAcactaatcatttttttaaaaattgtataagttATACTGGCCCAAAAGATCACTCTGCTTTATGTTCTTCGGAAGAATCAGATCATAAGATTGTTGAAAATGACCATCAGGCTGAATCTTTTAAGTGTACaatatgcaatatttattttgaaaatagagaTGATCAGAGGCAACACTATTTCTCAGATTTGCATAGAGTGAATGCTCATCGTAAAGCATCCTTAAAACCCCCTTTAACAGAAGAAGAGTTTTTAGATTACATAGacgAAAGTTCTAATTCTGAATCAGAATCAGATGATATTTCTCCATCAtgtgaaaaattaaatgaaaatatagagTTCCAGCCAAGAAACagaggaaattttttttcaaatcaccCTTTAAAGACATTCTATGTtacagaacaaaaaattttattttcaatttacaaAAATCTGATAATTCAGactgaaaattttgaatgtttGGACTTTGGATCAGTATGGgtatatttattgttatgtgCTGGTCATTTTGCTGGAGCTGTTTTTAATaaaaatgaaacaGTTGCTCACAAGACATTTCATCGATATGTTGTTCGCGCAAAGAGTGGTACAGCTCAAAGTGTTTGTGATAATCAAGGTGGAAATGCtccaaaatcTGCAGGATCTTCATTAAGAAGATACAATGAAGCAGctcttaaaaaaGAAATACAAGAGTTGTTGTTGACTTGGTCAGATCATATCAATGCATCAAATaggatattttataaatgttccaCATATGGAATGGGAACTCTATTtgggaaaaaaacaaatatttcaaaagaTGATCGACGTCTGTGTAAAATATCACTACCAACACAGAGACCaactttaaatgaaattaaacgtTTGCATTTACAATATTCAAGGATATATATACATGGTTCGTTTGGTGAAATTGAAGaagatatgaaaaaagtaaaagaacaagaaaataaagaaaGATTAAAAGATGATGTTGAATCCTTAAAGCAGGAATTAgaacaatcaaatttaaaagagaATACCCAATTTATTGTTCAAGCAGCTGAAGAGAAGTTTTCTTCATCAGAAAGAGACACAAAACATGCTCAGATATATGGTACTAAAAACTCTCCTATAATTGAGAAACAAGTAATTGCATCTAGACATGACAGCAAAGAACGAAATTCATCAGATtatgaaaattatgaaaacaagAAAATACACAATGATGGTAAAAAGGAAGAAAATAATGatgATGCAGTTTGGATGTGGAATCCAATATATAAATGGTGTTCTCAAGGCAATCTGAAtgaactgaaaaaattttttgaaacaatctCTGACAGTAAGAGTGAGCTGCATCAGTCTTTTCTTCAAGATAACAAAAGCAGTGAACATCATTCTAATCTCCAATATGACAGTGAAAGTAAGGAATACCAATCTTGTCCCCAAAATGACATTGTTAATAAAGAGTACCAAAACTCCCAAGATGGACAAAatagtgaaaataaaaagttgtgtttttatCCACATATAAACTATCTTTCGGTTTCTAAAAACAGTACTTTGCTTCAACGAGCGATTGTTACTGGCAGTCGAGAAATAGTAGCACTACTCCTTGATCTAGGTGCAGATCCATCCATAAGTAACACAATAGGTCAACTCCCATATGACCTTGCTTCACAAAACATTCGTAGAGAATTTCGAAGGTTTCGATATGATTATCCAAACAAATATGATTATGCAAAAGCTAAGattGGCACTCCACTGACTAAAGTtgaagaagaaagaaaaaaagaaacagatattaaaaagaaaaaacttcaaaataaagcaagaaaagaaaaactaaaattgcaaaaaatgcaagaagaagatttaaaaaaagttgagcaAGAGAAACAAGTATTTGAAAATCTTTCTGATCGAGAAAAAagAGCAGTAATGGCCGAAAGAAGAATTGCAACACAGCATACAACTTCCTCTagGTGCGCACGTTGTCGAGCAGCGATAGATGACAAAAACGCATTCGAAAAGTACGGTTTTAAATATTGCTGTATGAAATGTGTAAATGaacataaatcttttataggaaagtaattatttttacgaataa

Protein

Uniprot

Uniprot term	Description
Q58CQ5	tRNA endonuclease ANKZF1 OS=Bos taurus OX=9913 GN=ANKZF1 PE=2 SV=2
Q80UU1	tRNA endonuclease ANKZF1 OS=Mus musculus OX=10090 GN=Ankzf1 PE=1 SV=2
Q66H85	tRNA endonuclease ANKZF1 OS=Rattus norvegicus OX=10116 GN=Ankzf1 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18826	bVLRF1	Bacteroidetes VLRF1 release factor	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041175	Domain	VLRF1/Vms1	Interproscan
IPR047139	Family	tRNA endonuclease ANKZF1/VMS1	Interproscan
IPR036770	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110	Repeat	Ankyrin repeat	Interproscan
IPR013087	Domain	Zinc finger C2H2-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16036	ANKYRIN REPEAT AND ZINC FINGER DOMAIN-CONTAINING PROTEIN 1	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0030433	Biological Process	obsolete ubiquitin-dependent ERAD pathway	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K26089	ANKZF1, VMS1; ankyrin repeat and zinc finger domain-containing protein 1	-	Ribosome biogenesis	ko03009	deepkoala