Gene detail

Detailed information of XP_065667285.1 in Hydra vulgaris

Genomic Location: NC_088931.1:2006544...2008846
NR annotation: XP_002160791.3, transcription factor Sox-13 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_065811213.1

ATAGCGCTAAAactaaatatgtatatattgctTGGTAACTGTGAGTGTATACTGTTTACTAACAATTACACCCACAGCTTTTTGAAATAAGAATattaagtttgaaatttttttaatcgacATTAATAAATAGATTGATGCaatctatttaaattatatgcatataataCACTTACATGCTGTAACAAACACTCATTTGTATATAGGGACCAAAAGTCCCTAACCTCCTGGCAGCCAGAAAataagttgtaaatttttttttggaaattatgAAGTTGTTTGCAAGTCTatgtaaacttttaaactaaaaaaaaatttattttaagaatgtttttcttaaacttttggTGTATAcaagaaactaaatttttgcAAACAGAACTTGGTTTTTtataagagttttttaaatatacttatttacttaatacatttttaaaggtAAAGTATGAgttaatttaatatgttattacttaatgttactttttcaaaatatatactttaataataaatctcCATAACATATAACATAATGACAATATGTTATCCTTAAATACTTGTATTATATTATCTGCTCACCTGCCAATATCAAAACTAATTCAAATTGtttacaatgattttttttttaaatttttttaaaaaaatgttaaccaataagatcaaagaaaaaaataaccaattagattcttacttttaaaatggtGCACGCTTTTAATTGGCTAAGAACTTTTAGTATGacagttttgaattttttttaaaaagcatgttTGGAGAATACTGAACTTACGGCGCTAAGTTTAAATCAGTATGCTTTAACAATCATCCTAAGTagaacattcaaaaaaatatattagcaataATGGAGCTTGATTTCGGACTGGATTACTTTATGTCAGGAGCATTGCCTACACCCGAACCACAAGATGGAGATATAAAACACCTGAATCCTTTAGAACTaaacattgattttcaattggGATgcggaaataaaaaaaagtctagtaTGGATCATGTGAAACGACCTATGAATGCTTTTATGGTATGGTCTCAGATAGAACGTAAAAAAATGGCCGATATATATCCGGATATGCATAATGCAGAAATAAGTAGGCGGTTAGGTAAACGGTGGAAATTGCTATCCGACGCTGACCGCAGACCTTTTGTAATTCGTTCTGAGAAATTAAGGGAAGAACATATGCGACGATACCCTGATTATAAATATCGGCCAAAGAAGAAGGCTAAAGAACTAGCGGCTAAAGAATTGGCAGCCAAAGAACTgaagaatttttcaaaagtttgtgAATATAATATTGTCACTTTAACAAACGGAAAAAATGACGATTGGGATAAAAGCAAATATACAAACAATGTAATGTGTTGTGAAAACAATAAAGCGCTCCCTAATAAGACCTTTGTTACCATATCAAGACAAGTTGGTCAGATTGGTAGTTTAAGCAACATAACAGTATCACCTCAAAAATGTATAGATATTACTCCTTCAACATTATCGCCACCATCTGTCGTACCAGATTGTTGTGGTACACCACCGGACGAATATAACTCTGAATCATTTTATAACTACGATTCTTTTTCTGGAAAGAACAATTCAAATTCCCTATATCATGAAGATATGGacttattgataaattttgCTCGTTTTACTGATGGACTTCCGGATCTTTATACAACGCCGGAAGTTTCTGAAATGTTAACTGGTCAATGGCTAGAGAACGATCtcggtttttaaaattttttttttgaaattatatttttaagtcaaaTCAAAAGTTtaggttatttttaaatatttataatttatttgtctAAATTTTGTTTGTAGAAAATGTTTGGAAATGTTTGTAACTTGTTCGTTTCGctagaaagtttatttttgtgaaTGCGGGTTGACTCCCACATATCTTTTGCGCATAATTGTTTGAGGTTTGAATATCtcattttgttgatattttttgtacgtatttattttctttgcgatgtaaataaaatactctcacaata

Protein

Uniprot

Gene family

Uniprot term	Description
Q91731	Transcription factor Sox-11-A OS=Xenopus laevis OX=8355 GN=sox11-a PE=1 SV=2
P40639	SRY-related protein AES4 (Fragment) OS=Alligator mississippiensis OX=8496 PE=3 SV=1
Q66JF1	Transcription factor Sox-11 OS=Xenopus tropicalis OX=8364 GN=sox11 PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	HMG

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00505	HMG_box	HMG (high mobility group) box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009071	Domain	High mobility group box domain	Interproscan
IPR050140	Family	SRY-related HMG-box transcription factors	Interproscan
IPR036910	Homologous_superfamily	High mobility group box domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10270	SOX TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0009653	Biological Process	anatomical structure morphogenesis	Interproscan
GO:0030154	Biological Process	cell differentiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K23581	SOX4; transcription factor SOX4 (SOX group C)	-	Transcription factors	ko03000	deepkoala