Gene detail

Detailed information of XP_065669337.1 in Hydra vulgaris

Genomic Location: NC_088931.1:40880240...40961454
NR annotation: XP_047126017.1, latent-transforming growth factor beta-binding protein 1-like [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_065813265.1

agatCTCTGAAGCATAGTATACAATATACTATAGGACCGCTGAAACTATTCTATCGCTACACTAATAAAGTTTACGCTGGTCTGAACACAAATCATAGATGGGACTCACATTCAATCTCCTAGTTTTATAGATACCCACTGAATCAAAGGTTGTTCATACATGGATATTCCAGATGTTTATTCATCAATAGAGCctttcaatcaattttaagaTTTCAACATCATGCTTAgATTAGCATTATCCTTTGAAGATCCTTCACTTTGTTGTAAAGATGGTTATTCCAAAGGAGCTGAAATTTTACTTACTGATGTTACATGTGAACCTGATTCATCAgtggaaaaaaagttttctggaataaataatataatgtgtCGTGGATTTTTCCAACAATGTTGCACAATAACAGCGCAACAAAACTTCTGTCAAATGGGTGAAAAATTAGCACaAGCAAATTATTTATGCATGAAAAACTCATACCGTATTGGAGGAGAATACCAAAAAATTTGCTGCGACTGCTGCAAAGAGGGTATTATGCATGCTCGAAAAGGTGCAGAATGTTCAAATAATGCAATAAATGAAACTACatgcaaaaaatcttttgaGAATTGTTGTAGAGCTGTATTAAAAAcagaaaagattCTATCCTCCATTTCTCCAACCCCTTCTAATATAGACTTATGCTCTGATACTATTTGTGACAAACAATCTTCAAGTGGGTGTATCCATGAGCAAGGTAGTGTTAAATGTGTTtgcaaaaatggtttttattcaaGTGATCGACTTAAATGTTTagATATCAATGAATGCACTTCTAATGTTTGTCCATCAGGAGCTCAATGCAAAAATACAGTTGGAAGTTTTACATGTACATGTAGCGATGGGTATATCATGAGTGATGGAGCTTGTGTTCCAGTTATACctcaaaaatgtcaaaatggATTTATATTCAAAGATGGAATATGTCAAGataatgATGAATGTCTCAGTGGCTCTTATTGGTGTCCAAAAGATTCTTATTGTTTCAATGAGATTGGAAGTTATACATGCTTACAAAGTTGTGAACAGcctttttatcaaataatccAAGACAATATTTGTAAAGatgttaatGAATGCTCAGAAGGTACATTTAAATGTCCCAAAAATTATGAATGTCGAAATAAACAAGGTGGTTATGATTGCAAACTTACCAAATGTGATGTAGGTTATAAACTGTTTGAAGGATATTGTGAAGATGTTGATGAATGCTCTGAAGAACCAGGTATATGTGGCGAAAACGGTATATGCAGAAATGCTTATGGAAGATATTTTTGTGATTGCCAACATGGGTTTCATGTAGATCCTTTCACCCAAAAATGCAATGacaCAAATGAGTGTTTAATTGATCGAGCTATTTGTGAATTTCAATGCAAGAACACTGAAGGCTCATACCTTTGCATTTGTCCTAAAGGCTATGAAGTTAGAGGCAACTATTGTTATgATATTGATGAATGTTCTACTAATCCATGCCCTGATGCTTCCTTTTGCTTTAACAATTTTGGATCTTTTGCATGCATAAATCAAACATGTCCAAACAAATTTTTGAGTAGAGTTggaaacaaACCAAGTGAAATTGCAACTTGCAGAAAAATAGAGGATTGTCAAGGAAACAAAGAATGTGAAACAAATCAATTGCATTCTGTTAAAAGAATTGCATACAAGTTTTACAACAGAATCCCTATTAGAGGTTTTCAGTTTAACTATTGGACCAGCTTCAGCAGACAATTTTACTCAGTCAAATCAGAATTTATTAGTGGTAATGATGATGGAGTTTTTACCATTGAAAATGTCTCCAATGAAAAAATACAGATTTATAACAGTAAAACCGTGTTTGGACCGAAAGAAATCCAGTTAGTTATGCGTACTGACGTTTCAGCTCGTGCTAACAATATGCTGTTATGGCAATATGAATATCACATGTTTTTTTACGTTTCAGAATatgattttcattaaatacTGTAATAGAAATAAACGTTTCATTATTcggaatttaaaaatcaaaacttttaatataataattcgCATAATAGTAGCGTAATAGTGATTGCTAACACGTAAGTATAAAAacataagatttaaaatttttattgtaaaaagattattattttgagGCAAATGGTTTTAAagagtaaataattttttcttcgttaaaa

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07645	EGF_CA	Calcium-binding EGF domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR001881	Domain	EGF-like calcium-binding domain	Interproscan
IPR018097	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR050751	Family	Extracellular matrix structural protein	Interproscan
IPR049883	Domain	NOTCH1 EGF-like calcium-binding domain	Interproscan
IPR000020	Domain	Anaphylatoxin/fibulin	Interproscan
IPR000152	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR009030	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24034	EGF-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005509	Molecular Function	calcium ion binding	Interproscan
GO:0005576	Cellular Component	extracellular region	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17307	FBLN1_2; fibulin 1/2	-	Exosome	ko04147	deepkoala