Gene detail

Detailed information of XP_065669558.1 in Hydra vulgaris

Genomic Location: NC_088931.1:47130310...47164712
NR annotation: XP_047125808.1, probable E3 ubiquitin-protein ligase makorin-1 isoform X4 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q8JFF3	Probable E3 ubiquitin-protein ligase makorin-1 OS=Seriola quinqueradiata OX=8161 GN=mkrn1 PE=2 SV=1
Q5NU14	Probable E3 ubiquitin-protein ligase makorin-1 OS=Takifugu rubripes OX=31033 GN=mkrn1 PE=2 SV=1
Q4SRI6	Probable E3 ubiquitin-protein ligase makorin-1 OS=Tetraodon nigroviridis OX=99883 GN=mkrn1 PE=3 SV=1

Gene family	Subfamily
Transcription Factors Family	zf-CCCH

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00642	zf-CCCH	Zinc finger C-x8-C-x5-C-x3-H type (and similar)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR000571	Domain	Zinc finger, CCCH-type	Interproscan
IPR045072	Family	MKRN-like	Interproscan
IPR001841	Domain	Zinc finger, RING-type	Interproscan
IPR017907	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11224	MAKORIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0000209	Biological Process	protein polyubiquitination	Interproscan
GO:0016567	Biological Process	protein ubiquitination	Interproscan
GO:0061630	Molecular Function	ubiquitin protein ligase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15687	MKRN; E3 ubiquitin-protein ligase makorin	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala