Gene detail

Detailed information of XP_065670877.1 in Hydra vulgaris

Genomic Location: NC_088931.1:85722546...85764805
NR annotation: XP_004209019.3, rho GTPase-activating protein 1-like isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_065814805.1

TCATCGTCCTATGACGTCAGGGTTACCGACTgtgttttaattgattattgttgcggattttttaaaatataattgcaCAAGATTTTAATATTGCATATGAGTATTTATAGTGACTAGGTTGTTCAATGTTTACTAATTATTACTGGAAAAAGCATGCAAAGGAGTAACAAATCCAAATAAAAGgtttaaaaaatgaagaaacttACGATATCTGCTCaagatttacaaaatttaaatagtgGATCTGGACTTGTGATGGCAGATGACTTTTGTGTCCTTGGTgatcaagaaaataaaaatgcaacaaGAAGAGTTGAGCAtgATCTAGTTAAAGATTTCCTTAATGACCCCGAAATCAAACAACCTGAtgagtttaaaacaaatacggttgtcaagttaaaagtaaatgttATGGAATCATCAGGGTTATCAATAGAACAGCTACAAGACAAATATGCTgaaattgcaaaattaaaaatatttcatgttGCTGGTGATGATCTGGCAGGGCGTCCAGTTATTGCTTTTAGTGCTTGTCGCTTGCCAAACCGCAAGGACATTGATCATCAACAGTTGCTCTGttttttaaaagaagttttggaTTGCTATGTTGAAAATGATTATACTCTGGTTTATTTTCACTATGGTTTAAAGAGCATAAACAAGCCTTCTTTTAAATGGTTGCTGCAGGTTTACAAAGAGCTTGACAGAAAataCAAAAAGAACTTGAAAGCATTCTATATTGTTCATccaagtaattttataaaagctgcatttaatattttctaccCATTTATAAGcaaaaagtttggtaaaaaaattaataacatttcaAAACTGGATGAATTGACACCTCATCTTCGGATTGATCAAATCGATATCCCTGAAGAGGTTAAACAACATGACAAAATAGTTGTTGAAAAATTCAAGTCTGTTGCAACTAGTCAAGCTAAAGAAATACCGAAGACTCAACAATTCTCAATATCGTTAACTGAGTTAAAAAGAAAACACCCCGACCGCCATGTTCCGATCGTTGTTAGTTCTTGCATTGAATTTATAGAAGAAAATGcgTTAGATATCGAAGGGATCTTTCGAAGGTCAGCGCAAGTCAATTTGGTAAACGAAGCAGTTGACGCATTTAACATGGGTCAAATAGCTCAATTTTCAACATCAAATGTTCATCTTGCGACTGCACtactaaagaaatttttgcGTGACTTACCTGAACCTTTGTTGACATTTAAATTATACGGATCAGTAATGGAATTTTCTTCGCTTCCAGAAGAAGACAAACTAAAATCTACGAAACGAATGCTCAATGAGTTTTTACCGCCTCTTAACCACGATTTACTCGTATATTTGTTACGCTTTTTAGAAAAGGTTGTTGAGCATTCTTCAGCAAATCGCATGGTGTCATCGAGTTTGGCGATTGTTTTTGGACCGAATTTATTATGGTCGGATACTGAGAGTGCCAGCCTCACTTCCATGTCAAAGATTAATTCTTACTGCAAATATCTTATTGAtaattcatatttaatttttgacgaAAGCGCCTCGTGAATAGTATGTAATATTTTCTTACACTCGGTGGTTGATCCGCCGTTTTGCTGATTGAATCAGCTGTTTGAAATatgcaataaaagttaaatttagacATAAGATGCTGATGTAATCTggctaattaaataaatttaatttaagatttaaatagtGTATATTTAAAACTGCATGTCTTTGTTTCATTTGggatcaaaacttttaaaaataaaattaacttgtgAATGtcgtataaaaaaaatatcaatataagcataatatatattctatactggctttgaaaaaaaaattttgaagaatttCCAGTGGTTCCTAAACAAAGAcacaaaagttttaactttattttttgcatttatcaTGTAATTAGTGTTGTGTACGAACTACAAAGATTCATTATTCACACACATCGTTACATACATCGCTCGCGTATATATTAATCGTTCAGGTACATTGCTTATCGTTCAAGTATCGTACAttcataaaattgaattttaattttaccctagacttttttaatgaaaatatgtaTGAAGCGTTAATAATTCTAAATAGTATTATTTGTAATTGAAGAATATTACCAATAAAAAATGTGCCATgtttgttttacaaaacaataaaaaactggcttgttataaaatttattttcgatctttaacttattaaaaagataattatagaattatgatttgttttttacttttattaatagattatgttttgttcaatattatattggcataattttattattataaacgaGATTTTTTATCTgacttttgtaaaaatgtttattccAGAAAAAAACCcgcataaatataa

Protein

Uniprot

Uniprot term	Description
Q07960	Rho GTPase-activating protein 1 OS=Homo sapiens OX=9606 GN=ARHGAP1 PE=1 SV=1
Q5FWK3	Rho GTPase-activating protein 1 OS=Mus musculus OX=10090 GN=Arhgap1 PE=1 SV=1
Q9CXP4	Rho GTPase-activating protein 8 OS=Mus musculus OX=10090 GN=Arhgap8 PE=2 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13716	CRAL_TRIO_2	Divergent CRAL/TRIO domain	Domain	Interproscan
PF00620	RhoGAP	RhoGAP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036865	Homologous_superfamily	CRAL-TRIO lipid binding domain superfamily	Interproscan
IPR001251	Domain	CRAL-TRIO lipid binding domain	Interproscan
IPR008936	Homologous_superfamily	Rho GTPase activation protein	Interproscan
IPR000198	Domain	Rho GTPase-activating protein domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45808	RHO GTPASE-ACTIVATING PROTEIN 68F	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005096	Molecular Function	GTPase activator activity	Interproscan
GO:0005737	Cellular Component	cytoplasm	Interproscan
GO:0007264	Biological Process	small GTPase-mediated signal transduction	Interproscan
GO:2001136	Biological Process	negative regulation of endocytic recycling	Interproscan
GO:0007165	Biological Process	signal transduction	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18470	ARHGAP1, CDC42GAP; Rho GTPase-activating protein 1	-	Membrane trafficking	ko04131	deepkoala