Gene detail

Detailed information of XP_065671615.1 in Hydra vulgaris

Genomic Location: NC_088932.1:35810632...35877589
NR annotation: XP_047140860.1, uncharacterized protein LOC100205249 isoform X7 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_065815543.1

AGTTGAAACAAAATACTGCcaccaaaaatattaaacaaaggAGTGTTCGTTTTAATtgtaattcaaatttattagcTCCggtatttttacaaataaaatgctaatttattacatttgtaaCTTAAATTGCGCCAAGCTTAGTTAGAATAGTAATACAAAATGAAATTGGTTTCATGTGTAGCATTATATTTTGTCATTTCTAATGTTGTTTCATCAGATGTAGAttcaaatatacatttattCAATGAAAAGCTTGAAGAGGTTAATAACCTGATGCTAGACAAAGAAAATAATCAAATCATTTTTAGTACATTaaatattttgtatGCCGTCTCCTTAGATCTTAAAATAACTAAGaagcAATCTATGCCAAATCAGCCAGATCCTTCAAAAACTGATAGAGTAACTTCAATGATATCTGATTCAAACCTCTTGATCACTTGTGCATCAAATAAAGCATATAGCTCATGTTGGAGatttaataaatccaATTTATTATTGGATTCTGCATGGTCAGATTACGGACACAAACTTGCACCTGCATACAAGTCAGGGGAATACAACAAAATGATAttgacaaAACCATTTGTTTTCTCAACTGGTATGTACAGTGTATCTTCTGGAATATCTAAGTTTAAATATCCTGATGTTGATGACAGTGATACAGCTCGTATAAAAACAGTATCATCACAAATTTCAGatggtGCTACATTCATATCTACTTATGAATTTGATGATTCacaatatatatacttttttttcaaggaaGTAATGAAGCTTGATGCGAGAGAAaTATACATATCGAATGTAGCCAGAATTTGCAAGtatgatGAAGGAGGACCTATTACTTCATATGCAAGTGCACGATTTGTAACCTTTTTGAAAAGTAGGCTTGTCTGTAAAAAGGAAGTCTTGAATGGgaataaaaaagtttccttTTATTACGATCAGCTAGctttttcttATGAAGTTACTTTAACAAGCACTGATAATaaatctgaaaaatttatatatgccATATTTACAGAGTCACGcgAAACTGGCACCATTTCTGCGTTTTGTCGTTACCAAGTAACagaaattgttaaaacttttaacactaGTCCGTTAAAAGACATATCTGGGTATAAACAAGATATGCCCCCTTTAAGAAGTGAACTCTCTAGAGGAAAGTGTAAATCTAACTTGGATGTACCacaaaatagtgattttctgCATTCTACAGCTTATGGAGTCTTATACAACCAAGTTGAAAGcctctcattttttatattaaatgaagttAGCTTGACAACTATGGTTATCGGAGTAAATAAAAGTTCTCACTATATTTTGGCAGGAGctgaaaatggTAATGTTTACAAAATCAGTGTTAATAATGGCGAAGGCTCTCTTTCTCCAGCTATTGTTAATCCATTTaattcttCAAAAAGTATTCTATCTCTTATTTTGCTCAATaacACTGTTTATGTTGGAGGTGTCAGTGGGTTTGCTATGTTTGATATTTCACTATTTGAGAAAGaTGTTACTGCTGTTTCTGGAACTGgtgaaaacgaaaaaaaaagttttttcagcgCGTTTGTATTAATGCTTGTGTTGTTTATAATTGCATTGTTTACCATTATATTGCTAGTTATAGTTGCTTGGAATTACAGACGAAAACGGAAACATGGCGTTTCAGACCTTGATGGTGCAAATGATTGCCTAAAACCGCGTTCAGCTTAAATACTTACATAATCTTCAACGCCTTACTACCCATCGGCTTACAAGTCTTTTTGCTTGGTCAAGCTTACAAACTCAATGTTAAACACTTCGTGATATCTCTTGACAAGATGATTGGAATTGACTATAAGTTGTGCATTCGATGGTTCTCGCTCCACACAACgcatatattgaaaaaataatctactaaaaaactaaaacagtttttaaaattatttgtagaaaaatagataagttgtaaatattattttatctttaatattttttacttttatttatgcGTAAGAATATTGATCAAAAATCAAGTTATCAATCTTGAATcgattaaaacaaa

Protein

Uniprot

Uniprot term	Description
Q24322	Semaphorin-1A OS=Drosophila melanogaster OX=7227 GN=Sema1a PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01403	Sema	Sema domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001627	Domain	Sema domain	Interproscan
IPR036352	Homologous_superfamily	Sema domain superfamily	Interproscan
IPR027231	Family	Semaphorin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11036	SEMAPHORIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0001755	Biological Process	neural crest cell migration	Interproscan
GO:0007411	Biological Process	axon guidance	Interproscan
GO:0030215	Molecular Function	semaphorin receptor binding	Interproscan
GO:0030335	Biological Process	positive regulation of cell migration	Interproscan
GO:0045499	Molecular Function	chemorepellent activity	Interproscan
GO:0048843	Biological Process	negative regulation of axon extension involved in axon guidance	Interproscan
GO:0071526	Biological Process	semaphorin-plexin signaling pathway	Interproscan