Gene detail

Detailed information of XP_065672955.1 in Hydra vulgaris

Genomic Location: NC_088932.1:32786341...32861823
NR annotation: XP_047139605.1, dynein intermediate chain 2, ciliary [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

LOC100208059

ATGAATCTTACAAAGGTTACTGGGAAGGTTAATAATGGATTTATAGAAAAAAAAACTGTGACTTCTCTTTCTAACATAAGATCTCAAGAAAAAAACGATGCAACAAAGATAAAAAGAAAAAAGGATGAGGATGACTTGACACACATTGACGAATTGGATGAATGGCTTCAGCCAAAACAGTTAATGAAACCTGAAAACCAACTTGTGTTGACTGAAGCTGAACTAAAAGAAGAGTTTACAAGGATATTAACTGCAAATAATCCTCATGCACCTGACAACATAATTCGGTTTAATTTTAAGGAGAAGCAGTATAAACCAATAGCAAATGTCGAACAAATAGTGTTCCATTTCTCTATGGAAGGCAATCTTATACACAAAGATTCAGAGGAGGCTCAAAAGCAATCTTTATCAGACGACAAACACTCAATACACGAAGAGAATGATGAAACACATGAAGATAATATTGCAGTTGGTAATGCATTTACTAAACCCTCAGTGCAAAAAGTCACAAATCAGTTCAACTTCTGTGAGCGAGGCTCTCAAACATTTAATAATCCATCCAGGGAGCGTGGGACAGTAACAGAACCACCTCCAAGAGGAAATTTTTGCAGCAATGTCAATCAGTGGGAAATTTATGATGCCTATGTTGAAGACTTAAAAAGACAGGAAAAAGAGAAAGAAAAGGAAGTTAAAAAGTCAGCTAAAAGAGAGAGTGACACAAAGAAAAAAAACTCGACAACAGAAGTCATGAGTGATGAAGTTGCAAATGTCAGCCAAGTTGCCAAAATTATTGAACGAATGGTTAATCAAAATACATTTTATGAAATTGCTTATGATTTTAAATATTGGGAAGATGCTTCTGATGAATATAGAGAAAATGAAGGTACAGTGCTGCCATTATGGAAATTTTCTTATAAAGAAACAAAGAAAATGACTGTAACAGCTCTCTCATGGTCTCCTAATTATGAAGATTTATTTGCAGTTGGTTATGGCTCATATGATTTTTTAAAGCAAAGTACTGGAATAGTTTGTTTTTACAGTCTAAAAAACCCAACATATCCTGAACGGATTTTTATGACAGATTGGGGTGTTATGTGCTTGGATATTCATCATTCCTATTCAAATTTGGTAGCTGTTGGATTTTATGATGGTTCAATTGCTGTGTACAACTTGGAAAGCAAAGAAGATAAACCAATTCTTGTGACTTCAACAGAGTTTGGGAAACATACAGATCCTGTATGGGAGGTAAGGTGGCAAACAGATGATCTTGATGGAAACTTAAATTTTTATTCAGTATCCTCTGATGGAAGAGTTGTGTTGTGGACAATTATTAAAAGTGAACTGCAAAACACTGAGATCATTCAACTATGGATTGGATCAAGTTTTGGTGATGGTTATCAAGAATCAGATAAAAAAGTTCTAGGGTGTGGAACATGTTTTGATTTTCATAAAACAGTGGATCACTTGTTTCTAGTTGGTACAGAGGAGGGAAAAATACAAAAATGTTCAAAAGCTTACTCCAGCCATTATCTTAGCACTTTCAATGCTCATCAAATGGCAGTCTATGCTGTGCGTTGGAATTATTTTCACTCAAAAATCTTTATGTCATGCAGTGCTGATTGGTCTGTAAAAATATGGGATCATACTTGTTGTGATGCTATTTTTACATACAATTTGGGAAGTCCTGTTGGAGATGTAGCTTGGGCACCATTTTCTGCAACTGTATTTGCTGCAGTAACTGCTGACGGAAAAGTTGTCATTTTTGACTTGAATGTTAACAAGTATAAACCAATCTGCGAACAGAAAATTGTTCAAAAAGGGAAGACTAAATTGACCCATGTTTCTTTTAATAAAGTTCACCCAATAGTAATCATAGGCGATGATAGGGGGTGTGTGACTTCAGTGAAGTTATCTCCGAACCTAAGAAAAGCTATTAAGGAGCGCAGCAAAGGTCCAGAAAATGAAATTGCAAAGTTCGATAAACTGTTGAGTTTAGCTCACGATCCATTCGAGAATGTAGAAAGCACTTCATAA

Transcript

rna-XM_065816883.1

TTTTAACTTAGACATAAATAATTCAtggagtatttataaaatcacatatttttagttagattatgaGTAAGGTATCTTTAAAATGAATCTTACAAAGGTTACTGGGAAGGTTAATAATGGATTtatagaaaaaaaaactgtgaCTTCTCTTTCTAACATAAGATCTCAAGAAAAAAACGATGCaacaaagataaaaagaaaaaaggaTGAGGATGACTTGACACACATTGACGAATTGGATGAATGGCTTCAGCCAAAACAGTTAATGAAACCTGAAAACCAACTTGTGTTGACTGAAGCTGAACTAAAAGAAGAGTTTACAAGGATATTAACTGCAAATAATCCTCATGCACCTGACAACATAATTCGGTTTAattttaaggAGAAGCAGTATAAACCAATAGCAAATGTCGAACAAATAGTGTTCCATTTCTCTATGGAAGGcAATCTTATACACAAAGATTCAGAGGAGGCTCAAAAGCAATCTTTATcagacGACAAACACTCAATACACGAAGAGAATGATGAAACACATGAAGATAATattgcaGTTGGTAATGCATTTACTAAACCCTCAGTGCAAAAAGTCACAAATCAGTTCAACTTCTGTGAGCGAGGCTCTCAAACATTTAATAATCCATCCAGGGAGCGTGGGACAGTAACAGAACCACCTCCAAGAGGAAATTTTTGCAGCAATGTCAATCAGtgggAAATTTATGATGCCTATGTTGAAGACTTAAAAAgacaggaaaaagagaaagaaaaggaAGTTAAAAAGTCAGCTAAAAGAGAGAGTGacacaaagaaaaaaaactcgACAACAGAAGTCATGaGTGATGAAGTTGCAAATGTCAGCCAAGTTGCCAAAATTATTGAACGAATGGTTaatcaaaatacattttatgaaattgcttatgaTTTTAAATATTGGGAAGATGCTTCTGATGAATATAGAGAAAATGAAGGTACAGTGCTGCCATTATGGaaattttcttataaagaaacaaagaaaATGACTGTAACAGCTCTCTCATGGTCTCCTAATTATGAAGATTTATTTGCAGTTGGTTATGGCTCATatgattttttaaagcaaagtactggaatagtttgtttttacaGTCTAAAAAACCCAACATATCCTGAACGGATTTTTATGACAGATTGGGGTGTTATGTGCTTGGATATTCATCATTCCTATTCAAATTTGGTAGCTGTTGGATTTTATGATGgttcAATTGCTGTGTACAACTTGGAAAGCAAAGAAGATAAACCAATTCTTGTGACTTcaacagagtttgggaaacatACAGATCCTGTATGGGAGgtaaggTGGCAAACAGATGATCTTGAtggaaacttaaatttttattcagtaTCCTCTGATGGAAGAGTTGTGTTGTGGACAATTATTAAAagTGAACTGCAAAACACTGAGATCATTCAACTATGGATTGGATCAAGTTTTGGTGATGGTTATCAAGAATCAGATAAAAAAGTTCTAGGGTGTGGAACATgttttgattttcataaaacaGTGGATCACTTGTTTCTAGTTGGTACAGAGGAgggaaaaatacaaaaatgttcaAAAGCTTACTCCAGCCATTATCTTAGCACTTTCAATgCTCATCAAATGGCAGTCTATGCTGTGCGTTGGAATTATTTTCACTCAAAAATCTTTATGTCATGCAGTGCTGATTGGTCTGTAAAAATATGGGATCATACTTGTTGtgATGctatttttacatacaatttggGAAGTCCTGTTGGAGATGTAGCTTGGGCACCATTTTCTGCAACTGTATTTGCTGCAGTAACTGCTGAcggaaaaGTTGTCATTTTTGACTTGAATGTTAACAAGTATAAACCAATCTGCGAACAGAAAATTGTTCAAAAAGGGAAGACTAAATTGACCCatgtttcttttaataaagttcACCCAATAGTAATCATAGGCGAtgatagGGGGTGTGTGACTTCAGTGAAGTTATCTCCGAACCTAAGAAAAGCTATTAAGGAGCGCAGCAAAGGTCCAGAAAATGAAATTGCAAAGTTCGATAAACTGTTGAGTTTAGCTCACGATCCATTCGAGAATGTAGAAAGCACTTCATAACTGAAGGGTGgttcatttaaattaaagtatttgtacAATTTATCTTGtgagttttaatataaaattttaggatagtaaatatatatatgta

Protein

Uniprot

Uniprot term	Description
Q16959	Dynein intermediate chain 2, ciliary OS=Heliocidaris crassispina OX=1043166 PE=2 SV=1
Q32KS2	Dynein axonemal intermediate chain 1 OS=Bos taurus OX=9913 GN=DNAI1 PE=2 SV=1
Q8C0M8	Dynein axonemal intermediate chain 1 OS=Mus musculus OX=10090 GN=Dnai1 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR050687	Family	Dynein Intermediate Chain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12442	DYNEIN INTERMEDIATE CHAIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0003341	Biological Process	cilium movement	Interproscan
GO:0007018	Biological Process	microtubule-based movement	Interproscan
GO:0036157	Cellular Component	outer dynein arm	Interproscan
GO:0036158	Biological Process	outer dynein arm assembly	Interproscan
GO:0045503	Molecular Function	dynein light chain binding	Interproscan
GO:0045504	Molecular Function	dynein heavy chain binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10409	DNAI1; dynein axonemal intermediate chain 1	-	Cytoskeleton proteins	ko04812	deepkoala