Gene detail

Detailed information of XP_065674787.1 in Hydra vulgaris

Genomic Location: NC_088934.1:11307010...11345495
NR annotation: XP_047139272.1, low-density lipoprotein receptor-related protein 1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

rna-XM_065818715.1

AATGATTAATTTGAGGTAGTACCCTGGGGCACTTTTGAAAAACTAGGTGATTTCATATGGAATAACCCAAATGTATAATACTcatttatataagtCCTccttctattttatttattccaaCCAATAATAAGCTGATGAAAATTTCTAATGGAGATTATACTTTGGAAACTGATTTAGGGCATATAGCctcatttgattttaattatgttatgcTCCCAATTTTGTATACTACTGATGGGAACAGCTCAATGACAATATTTTCTCTTTCAGATGAATTTCTGGTAGAATCTAATAAATTTCACCGGCGTTCCAGTGAGCCAAGGTATAAAACGTTAAAGACTTTAATTAATGTTTCGCCAAGTCATATTGTAGCTGATTATATTGGAAATAATGTTTACTGGGTTGATTCCAGACTTGATTACTCTGGAATTTATATGGCAAACTTTATTGGAGAATTCAAAAGAAATGTACTAAAATGTACCATGAAGATAGAAGCATTTACCTTAAACTCTGAGGAAGgCAAAATGTACTGGTGTGAGAATTCATTTGAACCACAGATATTTGAAGCGTATATGGATGGATCAAGTGCAAAATCATTTTTCTCTGAAAATCTTGAGTTTCCCACAAGTTTAGCAGTTGATCCAGCTTCAAAAAGATTGTTCTGGGCTgatatgaaaaaacaaactGTTGAAAGTGTTGTCTTTGATGGGACATTGCACATGGTAGTGATAGACTTTTCTAGACACCCTAAACATTTCTTACCAGTTTCAATTGATGTTTTTGAAGGCAATATTTATGGCTTGATGAAATACAGTGGAAGTGtatttaaagttgataagttgggtaaaggaaatttttcaattttaaaaggaGATCTTTTTAAAACGACTCAGCTTCGTGTTTATCATCAATCTAGACAGCTATCTACTGTTAAAGattttaaaaatccatGTTCATTCTCAAGCTGTCCACAAATGTGCATTGTGATTGGTGGTGCTGCTAAATGCATTTGCCACGAAAATGCTGTCAACTGTGATAAAAttcattgcAATAATAGTTTTTGTAGTGACAATGGAAATTGCACAGTAATTGATGGAAAAAACAATTGTTTATGCAACAAAGGATTCAAAGGGATTGATTGTAGCACACAAACCTTATGTGACAAATTAATTTGCAAACATGGTTTTTGTAAAGTCAATGATGATAAACCAGAATGCATCTGTGATAAAAACTTTGTCCTCAGTGAAACTAGTCCTTTTGACTGTATTCCTTTGTGCACTAAAGAATGTCTCTATGGTTACAAGTGTGTTTTTGATGGCAATAATGTTCAAGTTTGCAGTTGTTCATCAAGTAATTGTACTAATGTGGACAATCAAAAAGGAGCTTCAACTAggCTGTTAACAACTTTGATTCCAGTGATTATTGGTGTTTTACTGGCTATTGTAGTATTGGTTGTAATTGCCATAAAACGAAGAAGACAgTACAATCAGTATGCACCAAGAAAGATCAAAAATCTAGAAATGGAAAATCCAACTTTTGCATATAGTGGATTGCAAGTGAGATTTATGATGATTCATTTCCTGAATCTGATCATTTTATGACAGAGCATAAGaatTTCAATGAAATTACATATGACCCATCGTTCTCCGAAGGAGAATCTCTAGATCGTATGCTTTTTCGAGATCCATACaacgaaaaattaaaattggttGATGACGACTACGAAGCATGAGTTTTTAGATGCTTTGGAATTTTCTATCGAATTCATTTTTCGTGGTGAAATATGGAATTGATCTTAAAGTAGCATTGATTCTTTTAAAGTGTTTTCACCTGTTAAGTATAAGCTTAGCTTTTAACAGGAATTCTTTTGAGATGttcgaaaacaaaaaataacgataaaacttttaaacttttctatttatttgttctactatttattttatttattgtaattaaccAGTTCCTgcagttactttttttatttctgacattattattttttaaactttttattacgGTATTTGTTTTATTGCGGTATATGCTTATAATATTACggtatttgttatattatggTATATGCTTGTAAAGCCATTAATCTTGATCCTTTTTTTCTCTCGATAttttcgatatatatatatatattttttttttttttttttttttgtcgaaaTGAGGCAGTTACGCAATATTTTAAGGAAATCTAagacaactttatttattttgttacatGTGCATCGCCGATTTTAGCCTACACCAGAATGTtggctttaaatttaaatttttaacgaTCTTATTTTAACATAACGCATTCGTTAAAGGAAAGTTTGTGTGcagtaaaacttttattaaatttatcaataaagttCAATACGATTTTAGAAATTCTGTTTTGTAcggtttttatttaatggatttttattgtaaa

Protein

Uniprot

Uniprot term	Description
Q04833	Low-density lipoprotein receptor-related protein OS=Caenorhabditis elegans OX=6239 GN=lrp-1 PE=1 SV=1
A1Z877	Nidogen OS=Drosophila melanogaster OX=7227 GN=Ndg PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00058	Ldl_recept_b	Low-density lipoprotein receptor repeat class B	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742	Domain	EGF-like domain	Interproscan
IPR050778	Family	Cueball/EGF/LRP/Nidogen	Interproscan
IPR000033	Repeat	LDLR class B repeat	Interproscan
IPR011042	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46513	VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0017147	Molecular Function	Wnt-protein binding	Interproscan
GO:0042813	Molecular Function	Wnt receptor activity	Interproscan
GO:0060070	Biological Process	canonical Wnt signaling pathway	Interproscan