Gene detail

Detailed information of XP_066912266.1 in Clytia hemisphaerica

Genomic Location: NW_027103528.1:764501...771771
NR annotation: KAJ6632793.1, Semaphorin-5B, partial [Pseudolycoriella hygida]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066912266.1

ATGGAGGTTTTTGTATTTTTATTGTTGACATGTGTTCAATGTTTATTGGTATTTGGTGATGTCTGTATTCCTGCCAAACATCGAAAATTTACCAAGGAGGATTTAAAAAGAGATTTCAACACGAAAGAAATTTCAAAGAGTTCAGCATTCCAATCGATCGTGACCAACGAAAAAACAAATAAACTATACACCGGAGGGAGAAACTCCATCACCGTGCTGGACGGAACAAATCTCAATAATATATCTCATATATCATGGAAAGTCGACAACGAACGATGTTTAAGTGAAGGGTTGGTACCCAAAGAATATTGCAATAATCACGTGACATTAATCAATTTGTACAAAGACAAAATCGTTGCTTGTGGTACTGGCTCTACGAGGCCGGTGTATAGAGTATTCTCACAAGACAGTTTAAACGTGACAAGAGAAGGAAACCGACTTTGTGCTTCACCGAATCCTGAGCATCGAGTCATCGGTCAAATCACTTCTCTCGGAGAAATGATTGTAGCGACGTATAAAGATCAGAAAGGACGAGATTCAGAGGTCCATGGTAGTTTTATGCCAGAAAAATTACCAGTATACAGAGCGAAACTAAAGACTGGTGCCGATGACGTCAAACCAAGTGCCGAGTTCATCAAAAGTTTCTACATCGGGAATAGCGTTTATAAATTCTTTATTGAAGAAGCTGAGGAAAATGGGAACCAACAAACGCCCACCGTTGGGCGGTTTTGCCAAACTGATAATGGCGGACCTAGCTTCATTTCCAACAGATTATGGACAACGTTCAGGAAAGCTCGTTTGAATTGCTTTTACAATCGTGCAGATAACAAAATGGTGTTCAGACATCTAGTTGATGTCGACTATGACGCAACCAAGAAGATCTTCTATGCTATCTACACCATGACAAAACATGAAAGTTTAGCATCCACTATCTGCACCTTCAAATTTGAAGACTTGGAAGAAGCTTTCTCTGGTAACTTCCTGGCAAAGAATGAGAATAACAAGGAATGGAATGAAATTCAAAATCCAAAAATCTTCAATGGGTGCAAAGTAAACAGAACGAAATTGTCATCTTCGATCAATCCAACTTCGCCTGGCAAAGAACCGACCAACAGTCTAAACCTGGAATCTTCAATGTTCGTCTCATCACATCGAATCATGGCTAAGACAATCTCAACTCAACCAGACATCTTTCAATACATGAAACCAGTGACCAGATTTTCCAAGATCGCCATCGACCAATTTTCAGGAGAAAACAAAGCACAAGAAACCCTTCTCAATATCATTGATGACCAAGGAAACATTTTCACATTACACGCCAACTTGGGGAACACAAAAGAATCATGTATCATTGAAGAAATTGCAACTGGAATGGAGAATCCAAAGATTTTCCAAATGAACCATAAAGAGCGTATGCTATACATCACGACGTCAGATGGTAGCCGACTGATGACGTATAATGTTGATAGCTGTGCAAGATACAATGGTAAAAGTGACTGTATCAGTGCACACAACCCCAGATGCGGATGGAACATGCAAACATCGCAATGTCTTTCTGTCAGAAGTAGCGGGAATGAAACTTTATTGCAAGATCTCAACAAATGTCCAAACAGACTGGACATCTTCAGCGCGTGGTCTTCATGGAAAGCTCAAGAACAAGAAGGAGGTCAAGAAAAATATTGTTTAGTTCGTCACCGGCAATGTCATTCGTGTGATCTTAAACTTTGTGACGTTGCTTCTACCGAAGTCATCAACTGCACAGCAAATGCTGTCACTGACATTGACCGATGGCTGAAAGAAGGTGCAATTGATGGATCGTGGTCATCTTGGCAAGAATGGTCCGAATGTGGAAACCATGTCAAATGTGGAAACGATACTAAGATTCGGTCCCGGCAATGTGAATCACCAAAACCAGCAAATGGAGGTCGTGAATGTATTGGAAGAGATTTCGAATGTACAACGTGTCCGAAAAAGAAAGAAATCATCAACATCATATGGACCCAGTGGTCAAAATGGAGCAATTGCCCTGACAAATCGGTCAAATATGAAACACGTGCCCGAACATGTAGTAAGCCCGGACAGTGTAACGGTAAAGATACCGAAAAACGAGATTGCCCGGAAGAGGGTGTGGCATTTGGTGAATGGTCGAATTGTAGTTGCATGCAGAAAGTACAACATCGTTGTCCAAAATCCATTGTTGGGTGTGGCACGAACTGTCCGCGAATGGAGCTCTGCCAATATCAGACTTGTGAGCCTAAAGGATGTCCTACAGAGAAGCCACCGATAGGAGTGGATGAAAGTGTGAAAAATAATTCCACTAAAAATGAAACTTCGCCATCAGACGGTGGCAAAAACTCTACAGAATATATTGAAGTAGTTCCATTAACACCTGCTCCGAATACAGGTCCAATGGATAGTGTCTGCAAAGACGGGTACACTTTCCAACTTGTCGAACTTATAAGTATTGGAGTTGGCATCATAGCTAGTTGCTTTGTAATTGTATTGACTATTGTCTTCTTAATGATCAGGCGCGATCGTAAGAAGAATAATTATTCACCGAACCCAGTAAGGAAAACTAAATCACAACCTTTGTTGAATGAAGATGAAACCGATACCCTGGAATCGAACGCTTGA

Transcript

Protein

Uniprot

Uniprot term	Description
Q9VTT0	Semaphorin 5c OS=Drosophila melanogaster OX=7227 GN=Sema5c PE=1 SV=3
D3YXG0	Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1
Q96RW7	Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01437	PSI	Plexin repeat	Family	Interproscan
PF01403	Sema	Sema domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR027231	Family	Semaphorin	Interproscan
IPR002165	Repeat	Plexin repeat	Interproscan
IPR001627	Domain	Sema domain	Interproscan
IPR036383	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR000884	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR036352	Homologous_superfamily	Sema domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11036	SEMAPHORIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0001755	Biological Process	neural crest cell migration	Interproscan
GO:0030215	Molecular Function	semaphorin receptor binding	Interproscan
GO:0030335	Biological Process	positive regulation of cell migration	Interproscan
GO:0045499	Molecular Function	chemorepellent activity	Interproscan
GO:0048843	Biological Process	negative regulation of axon extension involved in axon guidance	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06841	SEMA5; semaphorin 5	-	Axon guidance	ko04360	deepkoala