Gene detail

Detailed information of XP_066913841.1 in Clytia hemisphaerica

Genomic Location: NW_027103573.1:7336...32189
NR annotation: XP_047128733.1, vacuolar protein sorting-associated protein 18 homolog [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066913841.1

ATGGCGGATCTTATGGACCAATATGCTGACATTGAAGTCAATGCATCTTCCACAAACCCATTCCTGACCAATGAGACAGAGGAGATGATCAAAACTGGTTTTGTTCCATTGCAATCACCAGATACTGAGACTCCAATCTTCAAAAGAGAGCGTTTTTCTTTCAGACCCAACTCAAAGATTGTTGACATAGATGTGTCAAATAATCTCATGTTTATTGGTTTGGAGAGCAATCATGTCAAGAGAATTGATATTTTGCACCCAAATGAAACTGACACCATTGAAGTTTCCAAAAAGTCTGGGGATAGTATAAGGAAGCTTCACTTGGATCCTTCTGGCAACCATTTACTCATTGCTATGAAATCTGGCGAAGTATTTTATCTTGGTAGCAGTAACAAGAAAGCAAGATCATTGGAAAAATTGAAAAATTTGGAGATGGAATGTGTTGGTTGGAATAAAATCTCTGCTACTGAAATCTCAACAGGTCAAATTTTATTGGGAAGCAGAAAAGGTGTTATTTATGAAACTGACATCAATTCTGAGGAAAAATTCTTTCTCTCCATGGGATCTGATTCACCAAAGCAGATCTTCAATGTGAACGTTGGAAGAGAAAAAGAAGAAAGCATAACCGAAATACACATCGAACGATTCCAAAATTTCGAGAAAAGATATGCTGTATTTGTTTGCACCAAAAGTCGTTTTTATCAGTTTGTCGGTGATGCGTCTAATGAAGTGCCAATGTTCCAGACAGTCCTCAACGTTTTCAGTCCAAATCCCACACCTTATTTAGAATTACCAGGTGATCTATCAGAAAGTGATTTTGGATTGTTCTTTCCTCGTGCTAAAGGATTACCCAAGTTCTTCGGCTGGTTGACCGGTCCTGGTGTTTATTTTGGCCAATTGGATTTCTCGAGATCTTCTTTGAAACAAAATGTCACCACTGATTCCAGGTTATTGAAGCCAACAGAGATACAAAGAGACGTTCCACTTTCGATTGGTATCACAGAATTTCACTGTATACTGCTCTACGAAAATAGATTTGAAGCAGTATGCACGCTGAATGACGAAGAAGATTACATGGAAAATATCCCACCAAGGTTGGGCACTATGATTGGTTTACGGTACGACATTCATCGGAAGAGCATGTGGGCCTTCACAGAGAGCTATATTTTCCAGTACAAAATCAATAACGAGACGCGTGATGTATGGAAATTATATCTGGATCGAGGTGATTTCGAACAAGCCAAACTGTACTGTAAGAACAATCCAGCACAAATGGACCTCGTTCTTCGCAAACAAGCTGATGCATACTTCCTCGATAAAAAGTTTCAACAAGCAGCTGCTACATACGCATTGACGCAAATCTCGTTTGAAGAAGTCTCCTTGAAATTTCTGCAAGCGAAAGATACAGAAGCCTTGAAGATCTTCTTGCAAAAGAAAATGATCAATCTAAAAAACAATGATAAAACACAACTGATGATGTTGGTGACATGGGTGATGGAATTATATTTGAATCAACTGGGCGAACATCGGGATAACGGTTTCGATGGAGGGTACGAAAACCTACAAGACGAATTTCGAAAATTCCTTAATCAAAATCGTGTCAAGAACATTTTGGAGCAGAATACACATGTAGCATATGAACTGTTATCAAGTCATGCTGATACTGAAAATATGATCTTCTTTGCCATGCTGGTTCACGATTATCCACGAGTCATTCGACACTACATACAACAGGAAGACTATAAAGGGGCTCTAGAAGTCTTGAAAAAAGAGCAAACAGAATATCAATCATTGTTCGAACAATTCTCACCAACTCTCATCCAACACATCCCAAAACAATTGGTTGAGTTATGGAAACAAAGGAATTTAGAACCACGTCGTATGATTCCGTCCCTGGTCACACAGACTGAGAGTAATAATGATGAGAGTATCCGATGCGCTATCGATTATCTTGAGCATTGTGTTTACAAGTTAAAAAATGAAGAGACTGCCATCCACAATTATCTTGTTTCGCTTTACTGTAAAATAGCAGAGGAAAGACCTTTGTTACAGTATCTAAACAGTCAAGGCCAGGATGACCAAAGTGTGTGTTATGATCTCAAATACGCGTTACGTCTATGTTCGGAAAACGGAAAGGATCAAGCTACGGTACAAATCTACTGCACTATGAACCTGTATGAAGAAGCAGTAGATCTGGCTCTGAAAGTCGACATTGAGAAGGCTAAATTGTACGCAGACAAACCGGAATACGATCGAGCTTTAAAAAAGAAGTTGTGGTTGAAAGTGGCACGACACGTGGTCGAACAAAAACAAGACGTTGGAAAGGCGATGGAGTTATTGAAAGAATGTCCGCTATTGAAGATTGAAGATGTATTGCCGTTTTTCCCTGACTTTGTCACTATCGATCATTTCAAGGATGCAATTTGCGAGTCATTACAGGAGTACAATCACCATATCGACCAATTGAAATCTGATATGCAGGAAGCAACAGAGAGTGCGAAAGTAGTGCGTGCTGAAATTCATGATATACGTAACAGATATGGAGCGATCGACAGTCAAGCTAAGTGTTCACTATGTGGTTTTCCATTGGTCACACGTGCTTTTTATTTCTTTCCGTGTTCACACACTTTCCATGCAGATTGTCTCATTGAAAAGGTCAAAGAAAACATGACGAACAATAAAAGGAATCGTGTGGAAGAACTGGTGAACACACTACGTGATTTAGACATGACCAGCAACAACCAAACCACCAACAGTCAAACCTCTCTTGCAGCGAAAAATTCTAAAACAAATCGACATACCTTACAGGAAAGTTTGGACGAGCTCGTATCATCAGAATGTTTTTTCTGTGGTGATGTTATGATCAAATCGCTTGACCAACCACTTATAGACGACTTGGAGTTTGAAAAACAACTTGATAATTGGAAATGA

Transcript

Protein

Uniprot

Uniprot term	Description
P59015	Vacuolar protein sorting-associated protein 18 homolog OS=Danio rerio OX=7955 GN=vps18 PE=2 SV=2
Q9P253	Vacuolar protein sorting-associated protein 18 homolog OS=Homo sapiens OX=9606 GN=VPS18 PE=1 SV=2
Q8R307	Vacuolar protein sorting-associated protein 18 homolog OS=Mus musculus OX=10090 GN=Vps18 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05131	Pep3_Vps18	Pep3/Vps18/deep orange beta-propeller domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR000547	Repeat	Clathrin, heavy chain/VPS, 7-fold repeat	Interproscan
IPR007810	Domain	Pep3/Vps18/deep orange, beta-propeller domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23323	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006886	Biological Process	intracellular protein transport	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0005768	Cellular Component	endosome	Interproscan
GO:0006904	Biological Process	vesicle docking involved in exocytosis	Interproscan
GO:0007032	Biological Process	endosome organization	Interproscan
GO:0007033	Biological Process	vacuole organization	Interproscan
GO:0007040	Biological Process	lysosome organization	Interproscan
GO:0008333	Biological Process	endosome to lysosome transport	Interproscan
GO:0030674	Molecular Function	protein-macromolecule adaptor activity	Interproscan
GO:0030897	Cellular Component	HOPS complex	Interproscan
GO:0048284	Biological Process	organelle fusion	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K20181	VPS18, PEP3; vacuolar protein sorting-associated protein 18	-	Membrane trafficking	ko04131	deepkoala