Gene detail

Detailed information of XP_066914733.1 in Clytia hemisphaerica

Genomic Location: NW_027103598.1:1654305...1670865
NR annotation: XP_055944338.1, L-carnitine dehydrogenase-like [Argiope bruennichi]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066914733.1

ATGGCTGAACCGAATGCTAAAAGAAGCAAGACTGACAGCAAAGGAAAAGTATGCTTGGTAGGCAGTGGCATCGTTGGTCGAAGCTTTGCTGTCATTTTTTCCAAAGCTGGTTATTCAGTTAGTCTACACGATACAGTCGAACAACAACTGAAAGATGCCATGATACTCATCAAAGCACAATTGGAAGATTTTGAAAACAAAGGATTACTGAAAGATTGTGTTCACCAAACTGCTGACGATGCATTTTCAATGATTTCAACGACACTTGATTTGAAAGAAGCTATGGATGGAGCATTCTTTTTGCAGGAAAGTGTGCCAGAGAACCTTGAATTAAAACAGAAAATCTTTAAAGAATTTGACGCATTGGCATCAAAGGATATGATCCTCAGCTCCTCAACTTCGGCTATCGTGCCATCTAGATTCACCCTCAATCTCAAACATACAAAGAACTGTCTTGTCTCGCACCCTATCAATCCACCAGCACTGTGTCCGTTCATTGAGATTCTCCCTTCACCAGAAACTGACCAGGAAGTAGTTGAGAAGACTTTATCTCTATGGCGTGAATGTGGAATGTCACCGATCACTGTCAAAAAAGAAGTCGCTGGATTTGTCCTCAATCGATTACAATACGCTTTGATGGGTGAAGCCTACCGCCTTGTCGAGAATGGTGTTTGTTCACCCGAAGATGTCAACACAACATTAACAGATGGACTCGCTATGAGATGGTCTCTCATTGGCCCATTCGAAACAATACATCTCAATGCCCCAAAAGGCGTCAAAGATTATTTCGAGCGTTACACAGCCAGTATGGAGCCTATCATACAAGAACAAACTGAAGCTAATACAGTCTTCAAACAAGAAACAATTGATAAAATCCACGAATCGATGTGTCGCATCGCACCTGTCGAATCGATCATTGAACGATCAAAACTTCGGGATTCACGACTTTCCGCACTCGCTGTTCATCGGATTAACGAGAAAGCGGGCATCGCTGTACCGACGACCGTCGGCGATACGATGAGCAACGAAAGAACAAAAGTGGAAAGTAAAGGCAAAATTTGCATCGTCGGAAGTGGATTGGTTGGCCGAAGTTTCGCTGTGATATTTTCCAAGGCTGGTTACTCAGTCTGTCTATACGACAACGTTGAAAAACAACTGAAGGAGGCCATGATTCTAATCAAAGCCAATCTTGATGATTTCGAAAGCAAAGGATTACTAAAATACACGGCTGTCAAAACTGCTGACGATGCATTTAGTTTCGTCACTACAGCAACAGACTTGAAAGAAGCAATGAGTGGAGCGTTCTTTTTGCAGGAAAGTGTTCCAGAGAACCTTGAATTGAAACAGAAAGTCTTCAAAGAATTCGACTCATTGGCTTCAGATGATATGATCCTCAGTTCGTCTACTTCATGCATTGTACCATCCAAATTCACCCTCAATCTCAAACATACAAAGAACTGTATAGTCTCTCATCCGGTCAATCCACCAGCGTTGTGCCCTTTCTTGGAGGTCGTGCCATCTACTGAAACCAACCAGGAAGTAGTTGAGAAGACTTTATCTTTATGGCGTGAATGTGGAATGTCACCGATCACTGTCAAAAAAGAAGTCGCTGGCTTTGTTCTCAATCGATTACAATATGCGCTGTTAGCCGAATCTTATCGACTTGTGGAGAATGACGTTTGCACCCCTGATGACGTAAATATCACTCTTACAGATGGTCTTGCAATGCGCTGGTCGCTGATTGGTCCATTCGAAACTGGCCACCTCAATGCACCAAAGGGTATCAAAGATTACTATGAGCGATATGGGCCACCAACGGAAGCCGTTCTAAAGGAACAATCAGAAACCGTTCTCAAGTTTAAACAAGAAACGATTGATAAAATCCACGAATCGATGTGTCGCATCGCACCCGTCGAATCGATCATCGAACGATCGAAACTTCGAGATTCACGACTCTCCGCACTTGCTGTTCATCGGAATAACGAGAAAGCAAAATTGTAA

Transcript

Protein

Uniprot

Uniprot term	Description
P14755	Lambda-crystallin OS=Oryctolagus cuniculus OX=9986 GN=CRYL1 PE=1 SV=3
Q8SPX7	Lambda-crystallin homolog OS=Bos taurus OX=9913 GN=CRYL1 PE=2 SV=3
Q9Y2S2	Lambda-crystallin homolog OS=Homo sapiens OX=9606 GN=CRYL1 PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02737	3HCDH_N	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain	Domain	Interproscan
PF00725	3HCDH	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006176	Domain	3-hydroxyacyl-CoA dehydrogenase, NAD binding	Interproscan
IPR008927	Homologous_superfamily	6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily	Interproscan
IPR006180	Conserved_site	3-hydroxyacyl-CoA dehydrogenase, conserved site	Interproscan
IPR036291	Homologous_superfamily	NAD(P)-binding domain superfamily	Interproscan
IPR013328	Homologous_superfamily	6-phosphogluconate dehydrogenase, domain 2	Interproscan
IPR006108	Domain	3-hydroxyacyl-CoA dehydrogenase, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48075	3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0006631	Biological Process	fatty acid metabolic process	Interproscan
GO:0070403	Molecular Function	NAD+ binding	Interproscan
GO:0016491	Molecular Function	oxidoreductase activity	Interproscan
GO:0016616	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0050104	Molecular Function	L-gulonate 3-dehydrogenase activity	Interproscan