Gene detail

Detailed information of XP_066916352.1 in Clytia hemisphaerica

Genomic Location: NW_027103674.1:2748982...2761517
NR annotation: XP_004207258.1, uncharacterized protein LOC101241007 isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066916352.1

ATGGGTCGTATGCGATGTATCGTAAAAGGTTGCTACTCAAACCATGGTAGTGATCCCAAACCTCAATCAAACCAAAGCGCAAAACAAGACGAACATATCAGATCATTTGGTTTCCCAAATAAAGCGCGAGATCCAATCATGAGGAAACTTTGGATCAAAGCCATCCCGATGCTTCGCGAAGATCTGGTTAACAAAAGGTCGAAGCCGGTCATCTGCATCAAACACTGGCCGGAAGGGTTCAAGTTCAAAATCGGTAAAGGTGGTTTTGTCAGACCTGTTCATCCACCTTCGATTTTTCCAGAGCTGACTAAGGCTGAAATGGTTATCCTGCCCAGCATGGTGTCAAAAAAGAAAAGGAAATCTTCTAAAACCGTTGACAAAGCCGGGAAAGTCCGAAAACCATCGGCACCGACTTTCACTGGCGCCCCTGCGATGAAGCTCCATTCGTTTGAATTAAAGGACTCTCTGAAACGTAAAATGGGCACTCCTTTTTATTCAAATCACAACAACAATCATAATTGGCAGGACCTTCCAGCTATAAAGATTCCAAAGCTTGCCGACTTAATTCCAGCTGCACGCTTCAAGCAAGATTTACCGACAACGTCATCGTCGAACCCTCGTCTTCCAACGACGACAAATTCCAACTTGATCCAAGCATGTTTCCAAAGAGATTTGTCGGCAAGTTCATCATCAAATACTCGTTTTCCAACGACAAATTCAAGAGCACCGAATAACACTTTGTCGATCCTATCAAACCTTGTTTCCCGCTTTCCGTCTGCAACAACATCAATATCGGCGACATCATTATCAGAAAGCACAGATCTATCGTTGCCAACAATGGTGGAGATGTCAAACGACAAACCACGAAAACCACTTTTTATTCCATGCTCAAAAAGACAACACTTGCAATTTCAAACAGTAGCCGAGAAGACATCAATGATGCCCCACAATGAAATGAATCGAGTCATACCTAATCGAACTCCCGATACCGATTCCGCTACAATTGAAACGTACAAGAAAAAGTTAGAAGACTTTCAACAGCAAATTGATCTGCAAAGAAAATCTTGGCCCGATAATCATGGGAATAGGCGCAGTAATGCAGAACTGATCAAAGAATTTTCGAACCGGCTTTCAACCGAATACGGGAAAAAATTTCGACCAATTTTACCTAAAGGTGGACTTCAAGACCAAAACCTGGAATCAATTTTGAAAGCTTATTGGAAATGGGCATGCGCGACGTGCATTTCAAAAGGGAAATCTGTGACCAGCACATCTTCAACGAAACAAGTTCTGGTTATTGATGACAACGATGGTTCTGTCGGTTCTTCCAATGATACTAAAGATGAATTACCAACACCCCAGTCCTCAGATGACACCATGATAGCGGTTAACTCGATTACTACCGTCTCTTCTATGGAAGTTATGCCTATCGTCTCTGCACCCCGACGCGCCGTGGATCCTACTCCTTCAGCTTCACTGCAATCGTCAAAGGTCGCCACACCACCCATCATCTCTGTCAAACCTTCCAATTTTGTTTACCACCCGTCTGGTCTCACTTACGCGCCCCTACCACCAGGCTCAAGTGCGGTAACCCTACCACCAGGACACCACCCTGTATCGATGCCACAACCACAGTTCATCCCTGTCAATTATATGCTTCCTAACGGGGTACCTGCTGCCCACCAACCCCCGCACGGTGTCCCAGTACAAGCTTCGAGAGGTGTCACCCCTATGATACAACCTCCTCCAGCACACGTCGTTGGAACTGCACCGATCCCCAACCAGCCGACAGCCGCTGTGGCACCGCAAACGCAAAGTGTAATGGGGAAAGGTGTACGCAACGATCTCTCGCACATCTTGAATCCAAAAGTACCGCTTCCAGACGTACGCTCATCTATTCGTGACGATGTGTTGAGAGCCTTACCGACCGATGTCGCTGATTGGACGGTACAGAATGTGGCGTACTATTTCAAAGCACATGGATATATTCACGAGAGTAAACTGCTGGAGGAACAGGAAATTGACGGTAGAGCAATGTTGTTGATGTCACGAAATGATTGTTTAACTGGTCTACGTATTAAACTTGGTCCTGCACTTAAGATCTATCACATGCATATTCACAAGCTTCAAAAGAAAACTGACTTTCTTGGATGA

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q5VXD3	Sterile alpha motif domain-containing protein 13 OS=Homo sapiens OX=9606 GN=SAMD13 PE=1 SV=1
D3YUG0	Sterile alpha motif domain-containing protein 13 OS=Mus musculus OX=10090 GN=Samd13 PE=4 SV=1
D3YXK1	Sterile alpha motif domain-containing protein 1 OS=Mus musculus OX=10090 GN=Samd1 PE=1 SV=1

Gene family	Subfamily
Transcription Factors Family	THAP

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05485	THAP	THAP domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050548	Family	Polycomb group and chromatin remodeling factors	Interproscan
IPR013761	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR006612	Domain	THAP-type zinc finger	Interproscan
IPR001660	Domain	Sterile alpha motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12247	POLYCOMB GROUP PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003682	Molecular Function	chromatin binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0042393	Molecular Function	histone binding	Interproscan
GO:0045892	Biological Process	negative regulation of DNA-templated transcription	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan