Gene detail

Detailed information of XP_066917125.1 in Clytia hemisphaerica

Genomic Location: NW_027103721.1:40726...62112
NR annotation: XP_047142668.1, THO complex subunit 5 homolog [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066917125.1

ATGAAAAACACAACAAAAACAAAAGGAGAGACAAGGAGGAGGAGCTCCAGAGGAAGTATTTCCGATGATCCTGTACCAACTAAAACCGCAAAAGTGGATGACTTAAAGAAAATCAGTGAAAACTTGAAAACTGAACTGAAAAAGACTGAAACTGATAAAAAACCTGAGCCAAACAATGCTGAAAGAAAAGTTGAAAGTTTGGATCGTAGAATCATTTCACTAGAAGAAACCGAGGCCGAAACACGTGACTCAGCAAGAGATGTAACAGAATTTCAAAACACTTGCACCAGTATTGAAGAACGATTGTCAAAGATCAATGAGTTGAAGAAAGAAGATAATGAAACGAATAAGGAGTTGATTGTTAATGAAAGGATCGAAGCCACACTGCTCACTACCAATCTAAAGAAATTGAACAGACTCACTCAAGTTAGAGGAAAGATTGCTAAAGAGAAAACACAAGAGGTGAAGAAAAAAGTGGATGGTCTTCATTTGGATCTACAGAATTTGTTGTATGAATTGATGCATGTGAAAAAAGAAATCCAAAAATGCATGAATTTCTCGTCTAAGGATGAAGAGCTTGATTTGGTTGATTTGGACAAGTTTTACGAAGAAGCTCCAGAAAGCGTCAGTCAACCTGCAATCACCAAAGAAAACCCACATCAACAGATGTTGGCAAGATTAGATTTTGAGATGAAAAAGAGGAAAGAATTAAATGTCTCCAAAAGTGAATTTGTTGAACAAAAGAAGAAGACTGAAGTTGAAATCAATCAAAAAGCTGATTATTTGAGTAATCTTAAGCCAAGGCTTGAACAAATTCTCAAAGCGTCGAGGCCAGTACAAGAATATATGAACATTCCTTTTGAAGCAGAAGCTATCCTTCAAGAAAAGGCACAATTTCTGGCAAGACCTTTGTACGTTCTTTACATTCAAGCCAAAGCCTACAAAGAGGTTTGCGATGAGAATCTTGAGATGGATATCGAAGGTGACCTCATGGAAGCCAAATCACTGTTCTTCTCTGATGACGTCACTGAAGACAATGATGCATTAAGTGACATATCAGATACAGAGACGGAAGCTGAGATCGATGAAAACCGAGGAGGGTCCAGTCGGAAACACGCGAAAAAAGATAAAGAACGCTTGAAGGAACAACAAAACAAATTGTTACAATCTCATCCATTGAAAATCTCACTCACAATACAAGAAAAAGATGCATTCAAAGTTCAGTTGACATTCCACCATTATCCAGCACTCAAAATCAATGCCATCAACGTCCAAGTCACCTTACTTTCCAAGTATGAATCGTTCGCCAAAAGTCCGTTGCTATCATCACAAAATATCCTTCAAGATTTATGTTGCTTGGATACCGGCAAAACATCTCCCAATTCGGCTAACACCTACCAGATGGAACGTCTCAAGTTATCAGCCTTTGAAAATCACATCTCGAAGCTTGGTCTACCTTATTTCTGGGTTCAATGGATATGCGGGTTGAATTACTTACCTAACGAAGAGATCACTTGCTCTTTGCCGGATGCAGCTGTCAGTGTTAAACATTTCCAAAAGGTTGTGCGTGCGATTAAGTCGCGAGTGCGCTCTCGGCTATCGCTTCACGAACAAGTATCATCGCTAGAACGTTTATCTATCAGAGAACCTCAAAGTGAGTCCATGAAGAATATCTTACCAAAGAAGAGACTCTTATCCATGTTGTCGTCTTGGACTGATGCTTCTTACGAAGATCTCCAGAATTTTGAAGAGCACAAGATGTTGGAAGATTTAAACGTTGTCAACGAAGATTGCATACTGTATAAAGCTGCATTTACACGAGACGAAGTGATCAAAGTGTTGGTAGTGGTTCACACAAACTACCCAAAACAATCGCCTTTATTGTTGTTGTCATACAAAGATCAACGAAATCGGGTTAACCATAATGCCGACCTCAAGTGTCTTGAAAGCGAAGTGAACAGCTATGCAGAAGAGTTGCTTGAACACGGACATTCTAATGATATATTATCAAACATGTTGCTGCGTTTACAGTACTGTTTCGATATTTTCTGTGAGACTGGACCGAGCAGTGATACCAAAGAAAGATTGTATTCCAGAAAACGGAGAGGTCGAGACCGACAAAGACCATACCGTTACAACCCCGACGGTGGGTATTTCCTCCAACGTTGA

Transcript

Protein

Uniprot

Uniprot term	Description
Q8BKT7	THO complex subunit 5 homolog OS=Mus musculus OX=10090 GN=Thoc5 PE=1 SV=2
Q13769	THO complex subunit 5 OS=Homo sapiens OX=9606 GN=THOC5 PE=1 SV=2
Q6NY52	THO complex subunit 5 homolog OS=Danio rerio OX=7955 GN=thoc5 PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09766	FmiP_Thoc5	Fms-interacting protein/Thoc5	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019163	Family	THO complex, subunit 5	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13375	FMS INTERACTING PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000445	Cellular Component	THO complex part of transcription export complex	Interproscan
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0006406	Biological Process	mRNA export from nucleus	Interproscan
GO:0032786	Biological Process	positive regulation of DNA-templated transcription, elongation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K13174	THOC5; THO complex subunit 5	-	Spliceosome	ko03041	deepkoala