Detailed information of XP_066917328.1 in Clytia hemisphaerica

Genomic Location: NW_027103722.1:686940...720748
NR annotation: XP_002160279.3, survival motor neuron protein [Hydra vulgaris]


 Gene Structure
More details in Jbrowse  Sequence
CDS
Transcript
Protein
 Uniprot
Uniprot termDescription
P97801Survival motor neuron protein OS=Mus musculus OX=10090 GN=Smn1 PE=1 SV=1
Q8HYB8Survival of motor neuron protein OS=Felis catus OX=9685 GN=SMN1 PE=2 SV=1
O35876Survival motor neuron protein OS=Rattus norvegicus OX=10116 GN=Smn1 PE=1 SV=1

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF06003SMN_TudorSurvival motor neuron protein (SMN), Tudor domainDomainInterproscan
PF20635SMN_YG-boxSurvival Motor Neuron, YG-boxDomainInterproscan
PF20636SMN_G2-BDSurvival Motor Neuron, Gemin2-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR047313DomainSurvival motor neuron protein, C-terminal oligomerization domainInterproscan
IPR010304DomainSurvival motor neuron, Tudor domainInterproscan
IPR002999DomainTudor domainInterproscan
IPR040424FamilySMN complex subunit Smn1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR39267SURVIVAL MOTOR NEURON-LIKE PROTEIN 1Interproscan

 Gene Ontology
GO termsCategoryDescriptionSource
GO:0003723Molecular FunctionRNA bindingInterproscan
GO:0005634Cellular ComponentnucleusInterproscan
GO:0005737Cellular ComponentcytoplasmInterproscan
GO:0006397Biological ProcessmRNA processingInterproscan

 KEGG pathway
KOEnzymeEnzyme IDpathwaymapIDSource
K13129SMN; survival motor neuron protein-Spliceosomeko03041deepkoala

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