Gene detail

Detailed information of XP_066917567.1 in Clytia hemisphaerica

Genomic Location: NW_027103282.1:1864033...1877098
NR annotation: XP_047134746.1, ras and EF-hand domain-containing protein homolog isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066917567.1

ATGTCACTAAGAGATTTGGCAATGGAGCTGTTTTGTCAGTTCGACGACGAAAACAAAGGATATATCACACAAGACCAATTACTGAACGGTAGTTGTAAGGATGGTTTGTTCTCTGAATTCTCAGAAGGTCAAATTTTATCCATATTTGAATTACTGGACAAGGAAAATAAAGGAGTCATAACATTGAGTGATTTCACCGACGCCTTTGTGACCGACAGCAATGAAACAACTACCAACGAAGACCAATATTTCCATCAGAGTGAGAGAAGCTCCATACAGGCTTATTCTCCTATGTTTGATGGTGAGGAAATCTACGCTCGTTCACCATCACCATCTGCTGTTCAAGTATACAGTTACGGTTCTATGGAATCATTGCCTGGATATGGTGAGGAATCTATACAGAAAGAACTAAGGCGTTCAATGTCTTGCCAGAGTGAAGAAGACTGGTGGGGTGGATTCTCAACGCATCACGTCGAAGAATCACTTGATCTTTCAATGAGTGTTAACCGTAAACGAACTGATTCTTTACCGTCTATAATGGATCCATTGATCTTGAAAAGGACTAAAAAGAATCTATTGAATTCTAAGCGATGGGTGTCAGTCGATCAAGGGATTGATCAATCATTCATTGCAACAAATGGTCTCAATCATAGATTTGAAGAGAATAATAATTTGAAAAATAAACGTTTGAACGGGTTTACAAAAAGTGATTCTCGAATTGACAAGATCCTTGTACCCTTGAAGAAACTTAGTAAACATTTATCTAACTCTAAAAATGAGCTTCGCATTAACAAAGAAAAACGTGTTCGCAAGAAACGAAAAGGTCCATCATTGTTCGGTTCGAGAGACTCTGTTTTGTCGAGTATACGGTGCAGCAGTTGTGCTAGTGTGAGAAGTAACGATAAATATTACTCATCAAATGAAGACATTTCTTTCAATCGGGGTCATCCAACTCACTATGGTCGTAGGCAAAGATCTCACAGTAATTTACTTCAAGTTCAAAAACCAATATACATGAAACAATCGTCATACGAGCACCTTTGTTCTGATATTGATTGTAGCGATAACGAATCAGCATTAAGTAAACACAACAGTTATTTATCACATGACAGTTTATTATCCAATCAGAATGGAGGATTTTATATATCGTGTGAGAATGTATCATCACCAATTGTGGATGTGAGTGCAGAAAGTTGGGAAACATTTCTCAGAAGAATTGGCGGAGTTTCGTTGTTTGCAGGGAACACGAAATTGCGTTACTTATGGAAACAAATCAGTTCATATCAACACGACTTGCTGTTCAATTTCGAAGATTTCTTGAAAGGCGTTGTAGAAGAACATAAAACAGTTTTAACCAAATGTCAAGATGTCGAGTCCACTCTTCACTCGAAAATCGAACAGCACGAAAAAGCAATTGATTGTGTTTACGAAGAACTGGAAAAAACGCTCTCTAAAGAATTATCTCACCAAGAAAAACAGTTCACAGACCGTGAAGACAGCCTTCGTTCAGAATATAAACATTCTTTGGATATGAAAGAAGCAACGTGTCAAGAAAACTTGAGATTTTTCACGGAAATCACTGAGAAATACGACCACTGTAAACAAGAGCTGTTTTTGCTACAGGAGAAAAAGTCAAAGAACGACACACTACACCGACAAACTGTCGAAGAACATTTACAAATGTCTTCCGATTATGAAAGTATCTCACATGAGAATAAACTGTTGAAAGACCAATTAAAGCAAGTCTTGGACCAAAATCGTGAATTTCAAGAATGTATCAGTCAAATGTCCACCAATGTCAAAACTGAACAAGAAAAATATCAAAGTTTTGTACGAAAATACGAGGATCTTCTTGAAGAGAAAGAATTCTTGGAAGCAAACATCACCAACTTGTCATGGGAAAATGTAGAACTAAGGAATATGAACAACTCCATGAAACAGAAGCCCGAAGATATGAGTTTAAACGCTAGCATCAACAGTAACATGCCTGATCTACTTTCACCAATCAAAGACCGTTCTCCCAGCAATGACATCATTATGACGTCATCACCACGTGGTCAAAAAGGAAGAAAAAAGAAACTTTTACCGTTGATATCACTACAAGAAGAGATGGAAGAAGGTGAAATCGAAAGTGAATTAAATGGAGAATATTACACAGATGATGCGGGAGTGGCGTCAGAAAGTGACGAAAACATAGATATAGAATTGAATAAAACATTACAAGAAGAACTTCAAGAATCTGAAGATTTGGATATCACTGTAGGACAAGAAGTGTTCGAAGATGATGATTTGAGCTTTATGTTGAATAATGAAAAAGAAGAAGAACAAAGAAAAACATCAACAACTTCGATAACATCAATTCCAACGAACGGTGCTGTGTATAATGATAAGTGTGCACCAATGATTCGGTTTGCCACAAACATCCAAACCAACTTCAAAGTTATCTTCTGCGGAGATGCTAATGTTGGTAAATCAAGCATCATTCAACGGATTTGTTTCGATTCGTTCAGTGAAGAAAGAGAACCAACAATGCAAATTGATTCTTATTCTAAAACTGTACCACACGGAGAGAATATTGTCAACCTATCTATTTGGGATACACTTGGACAGGAAAGGTTTAACAGCATACCTCGATCGTACTATCGAAAATCAGACATAGTATTGGTTGGTTATGATATCACTGATGAAATGTCTTTCTCCAATCTTCAAACGTGGCTTCTAGATATCAAGGAATTTACTGATGATAATGTGTTGGTCATCATTGTTGGCAATAAAGTGGATAGTGAAGGAGATCGAAAGATTTCGTGCGCCAAGGCTGAGCAATATGCTAAGGCACACAATGCAATGTTTATGGAAGTCAGTGCAAAGTCTGGTCAAAATATCCAATCGTTATTGCACATAATGTCTAGTACACTGGTAAACCAAGCAGAATATGTCATGGTGCAAAACAACTTTGATGTTTCCAGTAATGCACAAACAGCAAATCTTATGGTTCCTCAAAAGAAGTTGTTGAATAAACATCCTTGTTGCCAGTAA

Transcript

Protein

Uniprot

Uniprot term	Description
P34143	Ras-related protein RabC OS=Dictyostelium discoideum OX=44689 GN=rabC PE=2 SV=2
Q9S810	Ras-related protein RABA1i OS=Arabidopsis thaliana OX=3702 GN=RABA1I PE=2 SV=1
Q40521	Ras-related protein Rab11B OS=Nicotiana tabacum OX=4097 GN=RAB11B PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13499	EF-hand_7	EF-hand domain pair	Domain	Interproscan
PF00071	Ras	Ras family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001806	Family	Small GTPase	Interproscan
IPR050227	Family	Ras-related protein Rab	Interproscan
IPR002048	Domain	EF-hand domain	Interproscan
IPR005225	Domain	Small GTP-binding protein domain	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47977	RAS-RELATED PROTEIN RAB	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003924	Molecular Function	GTPase activity	Interproscan
GO:0005525	Molecular Function	GTP binding	Interproscan
GO:0016192	Biological Process	vesicle-mediated transport	Interproscan
GO:0005509	Molecular Function	calcium ion binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K17199	RASEF, RAB45; Ras and EF-hand domain-containing protein	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala