Gene detail

Detailed information of XP_066917719.1 in Clytia hemisphaerica

Genomic Location: NW_027103734.1:993959...1000833
NR annotation: XP_012558352.2, B-cell lymphoma 6 protein isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066917719.1

ATGGTCGCAGTCGCGCATAATGAAACATTAATACACGCTCGTGAACTTAACGAAGGACTTGTTATGCCAGGGATGAAGTTGGACGCACACACCACACTTGTTGTGCCTTCTTACGAAGGAGAGGAACTTGGTAAAGAAAATTTATTTGATGATAATAAAATTACAAGACAAGATTCAGGTTATGATCAAATAGATGACTCTGCACCACGAGATAAAACATATCAAGAACAAGAGGAGATTTTGAGGAGAGTGGATGTAGACGAAACGTCCAGTGATAGCGGGTTAAACGAAGAAAATTTGGACGAAGAAGAATTTGAAAAAGAAGAAAGCGATCGTTTGGTGATGATGGATGAGAATATTGACGTTGACGAAGGAGTGATGACTTCTAAAGAAATCAATGCAGAAAATGAAAAATTACGACAACAATCGCTCGACGGCCAGGTCGTTATTTACGAAAACGGAACACCTATTCTCAAAGTGGAAAGTGGAACAACATTGGAAGTGGTCAAACTTTTATACGGTACCGAAAGATCGTCACAAGACAATATCATTGGTGTTCGGCCACGGCAAAAAGGAGCTTCTATCCCTTGTATTATCACATTAAAAGATTCGAGACTCGAAGAAAATTCTTATGACGTCATCACAAAAGGGGGTCCAGTCCGTAACTCATTTCAAAATGACGTCACATCGAACGAGGATTGCTCCACCACAAGGTGTATCGAATGTTCACGTGAATCATGGAAAACAAAGAGATACACATCTGTTGGAATGAACACAGAAATCAGTATCAATCCTCTCCTCGAGAATGATGCAACTCGTTCCATCACAGCCGGTGTCACTAAACAGAAATCTTCACAAAGTAAAGACCACGCACCTCCTGCACCCAAAAGAGGGCGTCCACCCTTGAACAGACAACCAGCATACGCTAATGTGCATCCAAAAGAATTCATCGTTGCACCCATTCCAGGAATGGCACCACCATCCTCTGAAATGGAATACCGTCATTACAGACGCGCTCAATCTCCGCGGCGTACCGCACCGGCGTTCGCGCACACTAAAATCTACCCTCCATCAGTAGATTTGGATAATGTTCCATATGAACCAATCAGAGCAATTCACCACCCCATCCCTCCACCACACCATCAAGCAAGGCGTCTCTCTCCTCCACTCAGAATGGTAAAAATGGAAAGTGAACGTCATTCACCACCCATGCCGCCCAGCAGATACGCCCGAGCTCACTCGCCCATTCCTTACAAGGGTGGGTACGCTCGAGAAGAGGAAAGACCTCGTGAAATTTATCGTGATTTCCACTCCTCACAAATGAAAGGTGAAGATAGCAAACGAAGGAGATGGAGCCCAAAATATTATCCTTATGAGCTTCCACCGCCACCAGGCGCCCTTGTTATTCCTCAACCACCCTACCCAACGCCTTCACGCCAACAAACATCCGCTCCTAAACAAAAGGAAGATCAAGAGCCACAAGTGTACGTTCTTCCTGAAGACTTTGATATGGAAAAAGATCCTTTCGATCCAGTCTCTATGACGTCACAAGACAGCAAAGATTCCACAGATTCCAACATAAGTAAACAAAGTGAAAGTGTGCGATCACCTGATACTCAACCACCTGCCACTCAATCACCTGCCACGATGTCTTCTCCTAAAGCGAAAACAACAGAGACTGCGCGACCGCCTCAACCACTCCTTGAAGGAGCACCGCCAGGCGAACATAAACTCTCATGTAAAATCTGTAAACAAAGTTTCCCTACCAAAAGTACATTATACAAACATTTGCGTGGTCATTCTTCCGATGAAAAACCTTTCAAATGTAACGAGTGTGGCCAGGGATTCACTTTGAGCAGTAACTTACGACAACATCGGATCATCCATAGAGGATACAAGCCTTTCCAATGCGAATATTGTGGCAAGAAATTTATGCGCTCAAATGTTTATAAACAACATCGACGAATTCACACGGGAGAACAAATGCATAAATGCGATCTGTGTCCGAGCGAATTTCTTCAAAAATACGCTCTGGTCAAACATTTAAAGAAGGTTCATAATATTGAAACTTATGAGAACTAA

Transcript

Protein

Uniprot

Uniprot term	Description
Q9UL36	Zinc finger protein 236 OS=Homo sapiens OX=9606 GN=ZNF236 PE=1 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00096	zf-C2H2	Zinc finger, C2H2 type	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013087	Domain	Zinc finger C2H2-type	Interproscan
IPR036236	Homologous_superfamily	Zinc finger C2H2 superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14003	TRANSCRIPTIONAL REPRESSOR PROTEIN YY	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000790	Cellular Component	chromatin	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005667	Cellular Component	transcription regulator complex	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0031519	Cellular Component	PcG protein complex	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K09200	SP-N; transcription factor Sp, invertebrate	-	Transcription factors	ko03000	deepkoala