Gene detail

Detailed information of XP_066919082.1 in Clytia hemisphaerica

Genomic Location: NW_027103806.1:158376...213275
NR annotation: XP_012556503.2, uncharacterized protein LOC100207710 [Hydra vulgaris]
Species Clytia hemisphaerica · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_066919082.1

ATGGATTTCAAAGCTGTCATTTCGAATCATGGAAATGAAAAGGTTTTCAAAGAATTATCTGGAGAAATTGAAAGGAGACTTCCTTCTGCACCAGTAGAATGGAAAAGGTCTTATGGACGAGCATCAAAAGAAGTGGTGCTGCAAGCAAGCTTCTCTAAATTTGATTTGGCAAAACTAAGCCCGAATTCTAATATTGAATCATTCTCTAAGTTGGCCACAAAGCCATTGTTACATTTATTCTGGATATCATGCAATGATAATGACAAGTACAAATCGTCTATCAAATCAGAAGTCAATAATTGGAAAAACCATCTTGCAACCAACAAGAATGTCGACTGGCTCATTGTTCATGTCATGTACCAAGAGAACGCAAAATCAGGCAAATCCAAGATTCAATTGCCAAGGTCTTCAGTTTTTGATAAGCTGAAGTCTGATTTTGGACAAGACAGATGTGTTCAACTCTGGGAACCTGACAAAGAAACTTTGTTTACAAAATCTAACGAATCTTGGCAAACATTGTTGTCTGCACTCAGAAATTCGCTACTGGAATCTTTTGGTAGATATTTGGATAAATTTGAAGAAAAAATTCGTTCAATGAGGGAAAAGTATGCAGACCCCAAATGGCCTTTTATTGAATATTTCTTAGTTCATGAGGAATTGGCGTTTATTTATCAAAGTATCACACTGAATGATGATGCCCTGATACAATACGATGAAGTAGATGCTCTCCTTTCACAATTCATCATCAACAGCAGTGGAAAAGAATTCCCAAAATGGCTGGCAGAGTTGAGCACGACTCCAACTATATGGGATGGTGTCATTTTGAGCGGCAAAGTAGCAGACCAATATAATACACTCATCAAATCAAAAAAAGCCACTCTTCTTGATTTGAGGAATTATATTTTCTTGAGGCAATGCAAATTATTGAGCAAGATGAAAAGGAAATGGGAAATCCCTTCAAGATTGTTGGAATTTCTTTTTGCGGTCATTCATGAATTTCGGCTACTTGACATGAAAGTCCCAGACCATATTGTGGCTTGTTGGATCGTGTTGACCTGTTTACAAGTTTTACCGGTTCTTGAGAAAGATGAAAATCTAGATCATTCATTCCGTGCTACGGTGGCACAAACCTATGACTTGATGCGACAGAAAATTCTTTTACTGGGTCAAGTTACTGGCGTGTATTACAATCGAGAGCAGAGCGAGGAAGAAAAAGAACTAGTTCAGCAGCTTTACAACGGGTTAGGAAAATTCAGCATGAATAAAAACCATTCACCTAAAGTAGTTGAAGCTGCTCTTGAAAGTCGAGGAAATTTCGAGAAACTTTATATTGATATCACCAACGCCTGTATGACGCGGTACGAGGATATTGGTCGAAAACACTCAAAAATGTTTGTGGGTATTGATTTAGCAAAATATTATCTTCAACATGGACAATATTTATTAGCAGAACCACTTTTAGAGACTTCTTGGAGTATTTATAAAAGTCAACGATGGGAAACTCTGTACACTGATGTTTTGATTCCGCTAGCGGATTGTCAACTCAAACACAAACTTCACGAACGATATTTGAGCTCTGTAACTTTACTATCATGTGCCCATTGTTTACCGTTCGAAACGAGGGATTTTTATTCGAAAGAGGTGATGCGGTTATCGAATGACAAAGACTTAAATCTACCTACGGTAAATAGCGAGCCAGTGTTGAAAATCATAAGCGCTAAGGTAGGCCTGGTTAAACATAAAGGACACATCGGGGATACAGTCCAAGTGAATATCATATTTGATAATGAATTAACGATGCCGGTTGAGTGTCAACGAGTTACGATCAATGCGAAACATTTTGATTTAAGTAACCCGGATAGCTTTTCAGAGAATGTCTTATCGGCACGTAAAAGTTTGTTCGAGAATAAAGACTTTGGTATGAATTCTATATCACCGCAGGAGAAACAGCCTCCAAAAGAAGAAACTGCCAAGGAAGCTTTAACGCCCAGTAACTTATTGAAACGGATTAAGAGCCATCGTAGAACATGGTCAAGGAATAAGAACGTTGTAGAAACCAACGAAATAAAAACAGATTCGAGTACCATCTCAATCGATGGCTCTACTTTAAACGCTACAGTTGAAAATGATGCAGACAGTGCTAAAAGAGCTTTATTCAAAAGCGAATCTGAAGCAGAACCGACCAGTCAAAATTCTGAAAAGACTGAAACAGCCAATAAGGAACGAGCGCATTCTGAGCCATCCAATAAGGATCCACCACAATCTGAGACGACCAATAAGGTTCGAGCGCAAAGTGAAACGACAAATAAAGGGCGATCACAAAATGAAGAAAAGTCCGAACACGACAGCATACAGCAAAATGGGGACATCCCTAAGCGCTCATCCCTCTTAGAAATAGCTAACGAAACCAATACAGATTTAGATAATCCCCAACCTTTATCTAATGAACAAGTAGATATTGTCAAAAGTGAAGCGACACCGAAAGAACAAGATTTATCACTTGATTTGAGTCAACTGAATATTGACGAAACAAGCACACCGAATAGAACATTAGCAGAAGAAACTTCAGTGAATTTGGATGTTGTCTTGGAAACAAAAGGAAGCCAACTCCTACAACCTGGTCGAAACAACATTCAAGTCATGTCCATTATCAACCACGAAGGCAAGTACAACATGCAATGTGTCAATTGCCATATTGGCAACTTACATTTCTACAAGAAGCTCACCTCACGCAAGGATGCTTCTTTCTACATGGTGACGGAGCCGCCGCGCGTGACTTGGACAACAAATTACCTAGTAGATTACTCGTTGACTGGCAGTAAACAGCGAATTCACGTGACCCTGATGAACGGACCGGGCGTCATTCAAGATGGCTCAACGCTTCTGATCTTGTCCAAAACAGGGTTACTTTTCTATGACTTGTCGCCTTCAGATATGGAGATTTTTCCACTGGAACGCGAAGGTAAATCACGCACTGACTCCATTTCAATCGTAGTGGATGACCAGAAAGAAAATGCCTTGTTGAGGTTACCTCTGTGTAAACCCTATGAAAGGGTCAATGTCTTTTTCGACGTCATGGCGCCAATGCATCAGGACTTCGGTCAGCAAAGTACTTATCAACACGAGATCAATTTTCATTGCAAATGGTTGGAGCATTTAGTGTCAGATACGCTACAACAGTTGACCATGATCTTTTATGAACCCTTTCAATTAAAACATGAAGTCGTCGTCACTTCCACTTTAGCGTTATTGAAAGTGTCCATTTGTGGTGTCAATCCTGTTCATTTGGTCTTTTCAAGTCCTAACCTCGTCATTGCTGGCAACTCTTTACCAGCTCTGAATGATGGTCAGGATGTGTCTAAGATTTACAATAGCGAGGAGACAGCATATCTATGGTCACTTAATCTTGATGAATTGAAAGATTGTATTACGGACGACGGCCAACTAGATTGTTTGTTTAGCATTGACTTCAAAACAAAAGAGACACATGAAGCAGTACCAGAACACTTTGAACGAAAAATTTCTATCTCTTTGACCAAATGTTTATTTTCTATTGATGTCAGCATAAAAACTGAAAAACCCAAGAAAGGTGAAACTTGCTCTGTCAGCATCACAATCAAATTGCTTGGCGACCGTCCTCAATTCTGTGAAGAAGATTCGACAAAACATTTGTGTTTAAAAATAGACCCTAGTGAACATTTCTGGAGACTTGCAACAGAGTCAAGCATGGACGACGTATCGAGGCCAGAATTCTCTGATGACGTCACTGAATGGTCACGTGATATTGATCTCGTTTGTGATGCCATCGGTGTAGTGAATGTACCTCTATTCGCTTTATGTTACGTCGATAATGTGGAGAAAAGTGGCAAGAGGGTATCGACGGAGCTTGTCAGCATGATAAACCAAAGTCAAGTCGATTATTTATCAGCCGGTAGAATCGTTTTCGTTGAAGAACTGAACTTAGAGACGGACGTTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3TLI0	Trafficking protein particle complex subunit 10 OS=Mus musculus OX=10090 GN=Trappc10 PE=1 SV=3
P48553	Trafficking protein particle complex subunit 10 OS=Homo sapiens OX=9606 GN=TRAPPC10 PE=1 SV=2
Q9VFB7	Trafficking protein particle complex subunit 10 OS=Drosophila melanogaster OX=7227 GN=SIDL PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003366 (this species only)

Pfam domain

No Pfam domain signature was detected for XP_066919082.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR045126 all species →	Family	Trafficking protein particle complex subunit TRAPPC10/Trs130	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13251 all species →	EPILEPSY HOLOPROSENCEPHALY CANDIDATE 1/TMEM1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006891 all species →	Biological Process	intra-Golgi vesicle-mediated transport	Interproscan
GO:0034498 all species →	Biological Process	early endosome to Golgi transport	Interproscan
GO:0048193 all species →	Biological Process	Golgi vesicle transport	Interproscan
GO:1990071 all species →	Cellular Component	TRAPPII protein complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20307	TRAPPC10, TRS130; trafficking protein particle complex subunit 10	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of XP_066919082.1 across 40 RNA-seq samples of Clytia hemisphaerica. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

40Samples

40TPM > 0

16Conditions

21.6Max TPM

7.8Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
Mature medusa	5	5	8.66	14.72
medusa · Experiment Condition A1	4	4	4.05	4.21
medusa · Experiment Condition A2	4	4	5.06	5.29
medusa · Experiment Condition A3	4	4	8.93	9.24
Early gastrula	2	2	21.37	21.55
Planula 24hpf	2	2	17.30	19.73
Planula 48hpf	2	2	9.86	10.39
Planula 72hpf	2	2	7.92	8.59
Primary polyp	2	2	6.36	6.39
Gastrozooid	2	2	4.20	4.67
Gonozooid	2	2	5.53	5.77
Stolon	2	2	5.08	5.97
Baby medusa	2	2	5.02	5.43
medusa · Experiment Condition B1	2	2	5.80	5.93
medusa · Experiment Condition B2	2	2	4.36	4.41
Mixed	1	1	10.36	10.36

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
ERR2816251	Mature medusa	not recorded	Mature medusa	not recorded	ERP110164	14.72
ERR2816250	Mature medusa	not recorded	Mature medusa	not recorded	ERP110164	10.57
ERR2862245	Mature medusa	not recorded	Mature medusa	not recorded	ERP110164	7.34
ERR2816249	Mature medusa	not recorded	Mature medusa	not recorded	ERP110164	5.73
ERR2816248	Mature medusa	not recorded	Mature medusa	not recorded	ERP110164	4.95
ERR3299475	medusa · Experiment Condition A1	not recorded	medusa	Experiment Condition A1	ERP115020	4.21
ERR3299476	medusa · Experiment Condition A1	not recorded	medusa	Experiment Condition A1	ERP115020	4.11
ERR3299478	medusa · Experiment Condition A1	not recorded	medusa	Experiment Condition A1	ERP115020	3.94
ERR3299477	medusa · Experiment Condition A1	not recorded	medusa	Experiment Condition A1	ERP115020	3.92
ERR3299480	medusa · Experiment Condition A2	not recorded	medusa	Experiment Condition A2	ERP115020	5.29
ERR3299479	medusa · Experiment Condition A2	not recorded	medusa	Experiment Condition A2	ERP115020	5.26
ERR3299482	medusa · Experiment Condition A2	not recorded	medusa	Experiment Condition A2	ERP115020	4.92
ERR3299481	medusa · Experiment Condition A2	not recorded	medusa	Experiment Condition A2	ERP115020	4.75
ERR3299483	medusa · Experiment Condition A3	not recorded	medusa	Experiment Condition A3	ERP115020	9.24
ERR3299484	medusa · Experiment Condition A3	not recorded	medusa	Experiment Condition A3	ERP115020	9.00
ERR3299486	medusa · Experiment Condition A3	not recorded	medusa	Experiment Condition A3	ERP115020	8.80
ERR3299485	medusa · Experiment Condition A3	not recorded	medusa	Experiment Condition A3	ERP115020	8.69
ERR2816231	Early gastrula	not recorded	Early gastrula	not recorded	ERP110164	21.55
ERR2816230	Early gastrula	not recorded	Early gastrula	not recorded	ERP110164	21.20
ERR2816233	Planula 24hpf	not recorded	Planula 24hpf	not recorded	ERP110164	19.73
ERR2816232	Planula 24hpf	not recorded	Planula 24hpf	not recorded	ERP110164	14.87
ERR2816235	Planula 48hpf	not recorded	Planula 48hpf	not recorded	ERP110164	10.39
ERR2816234	Planula 48hpf	not recorded	Planula 48hpf	not recorded	ERP110164	9.32
ERR2816236	Planula 72hpf	not recorded	Planula 72hpf	not recorded	ERP110164	8.59
ERR2816237	Planula 72hpf	not recorded	Planula 72hpf	not recorded	ERP110164	7.26
ERR2816239	Primary polyp	not recorded	Primary polyp	not recorded	ERP110164	6.39
ERR2816238	Primary polyp	not recorded	Primary polyp	not recorded	ERP110164	6.32
ERR2816241	Gastrozooid	not recorded	Gastrozooid	not recorded	ERP110164	4.67
ERR2816240	Gastrozooid	not recorded	Gastrozooid	not recorded	ERP110164	3.73
ERR2816242	Gonozooid	not recorded	Gonozooid	not recorded	ERP110164	5.77
ERR2816243	Gonozooid	not recorded	Gonozooid	not recorded	ERP110164	5.29
ERR2816245	Stolon	not recorded	Stolon	not recorded	ERP110164	5.97
ERR2816244	Stolon	not recorded	Stolon	not recorded	ERP110164	4.18
ERR2816247	Baby medusa	not recorded	Baby medusa	not recorded	ERP110164	5.43
ERR2816246	Baby medusa	not recorded	Baby medusa	not recorded	ERP110164	4.60
ERR3299472	medusa · Experiment Condition B1	not recorded	medusa	Experiment Condition B1	ERP115020	5.93
ERR3299471	medusa · Experiment Condition B1	not recorded	medusa	Experiment Condition B1	ERP115020	5.66
ERR3299474	medusa · Experiment Condition B2	not recorded	medusa	Experiment Condition B2	ERP115020	4.41
ERR3299473	medusa · Experiment Condition B2	not recorded	medusa	Experiment Condition B2	ERP115020	4.31
ERR2862244	Mixed	not recorded	Mixed	not recorded	ERP110164	10.36

Source: CnidoSite RNA-seq expression matrices (CHEMI_TPM, StringTie quantification over 40 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.