Gene detail

Detailed information of XP_066920319.1 in Clytia hemisphaerica

Genomic Location: NW_027103850.1:226410...243860
NR annotation: XP_020915324.1, digestive organ expansion factor homolog isoform X3 [Exaiptasia diaphana]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066920319.1

ATGATGAAAAGAAAGCATGACGATGATGAACACTCTACTGAAATGCATGGGGATATCAATAAGTTGCTAGGAGAGCTTCAACCAGCCAAAAAGTTGCTCAAGAATCTGTTAAAGAAAGGAAGACAATCAAAGGAAGATCTTCATGAGAGTGTCACAAAGGAGAGTGAAGACGAAATAGAAACTGAAGGAGAAGAAGGGAGCGAGGAAGATTTTGGGACAGCTTCTGAAAATGAAAGTGATCTTGAAATTGAAGAAGAGGTTGTTGATTCTACTGATCCATTTAGTGTTCATTTTGAACAAACTCTGGAAGAAAATATTGTAGATGCTTTCAAATCAAATGCCAAAATGCAAAAAGTCAAAACTTTCAAAAAAGCTGGCATGACTGTTGATGAATTCAGTTTTGAAAATATGAAAGATATTTCAGAGCATATTGTAGAGTTTAACTCCCCTCTTCTCAATTTTGGAATGGTTTCTGTAAAGGAGAAGTTGTCACAAAATTGGAGTGTTGTCAACAAGGCTAAAAAGTCTAAAGAAAACCTTACTGGGCTTCAAAGGGAACTTTTGAAACCTATATTTTCTTACCAAGATTTATGCTACACTGGTCGTAATTTTCATAATGGAGAGGAAATTAGAAAGCTGTATTCGCTTCATGCTGTAAATCATGTTTTGAAAACACGTACTAAAATTCTTAAACATAATGCTAAATTACAAAGTGCTGCTGAAGCTGGTATTGGAATAGAGGAGGAGCTCCGTGACCAAGGAATCACCCGTCCGAAAGTGTTGATTGTTGTACCTTTCAAAGATTCTTGCTTAAAGATTGTGAATGTTTTGAAGAAATTGCTGTTCGGGAATGAAAAGAAAGTGCAGATAATGAACAAGAAGAGGTTTCAGAAAGAATTTTCTTCAGATGAGGCAAGCCATCAAGGATACCGCCCTGAAGATTTTAAGCTGATGTTTGAGGGTAACATAGATGATGGCTTTCGTATTGGTATTTCCCTTTCTAAAAACACTATGAAACTTTACACTCATTTTTATTCATCTGATATTATTATTGCATCACCTCTTGGTTTGCGCACATTGATTGGAGGGAAAGGAGAAAAGCAAGATTTTGATTTTCTTTCATCAATCGAGTTGCTAATTATAGATCAAGCTGAAGTCTTCTTAATGCAAAATTGGGATCATCTTATCACTGTATTAGATCACATTAACAGAAGACCCAAGAGTACTCACGATACAGATATCTCCCGTGTCCGAATGTGGTCAATCAATGAATGGTCCAGATATTATCGACAAAACCTCATCTTCTCATCCTTCCCCACACCAGAAATCAACAGTATCTTCAATAGATATTTTCAAAATTTTGCTGGGAAAACAAAATGGGTCGTTACAGACAGTCCAGGAACTGTGCAGCATGTTGTTTCAGAGATCCCACAAGTATTCCGTCGTATCAATGTTGATGATTATGCTTCTCTTCCTGATAAGAGATTCGAGTTCTTTGTGGATCAAATGCTTCCTGATTTAGTAAAAAATCAAAAATCCATCGCCATCTACATCCCATCTTATTTTGATTTTGTTCGCGTTCGAAATTACATGAAGAAAGAAGAGATAGGCTTTGTTCAAATATCTGAGTATACAAAGAAAAGCTACTCCTCACACGCAAGGACCTTGTTTAGAGAGGGACGAAAGCAGTTTCTCATCTTCACTGGTCGATTTTTCTTTTATTATCGTTACCGTATCACTGGTATCAGGAATCTTGTGTTTTATGATATCCCTCTATATCCCCAGTTTTATCCTGAAGTTGTGAACTTTATCAAAACAGATGATAAGGAGGGTTCACCATCTTGCACTGCCTTATTCAGTAGGTATGATGCTCTGAAATTACAAGGTGTCGTTGGCACTGAGCGTATGAAGAAAATGATGTCTGGAAAAGCTGTTCATATGATTGTAACAGGCAAAATTTGTAATCAATCCATTGTACCAATAAACAAACAAAACGAGAAGATGCCTCAATTCTTTATGAAAAGCACTCAAAAAGGAAAGAAGAGAAAGCCAGTCACAAAACCTTCCATCAAACCGAAAGTGAAAGTGCATGATAAGGTGGATTTTGATGACGATGATGATATTGCATCTTCGGGGAAGGAAGAAAGTGACTATGAATCAGAGTCAGATCACGAAACAGCTCAATCCAAACGGCTCAGACTTGCTAAAGAATACATCAAACAACTTGAAAACGAAGAAATTGACACAAAAGAAGCAGACGAGATCGATAAAGATGCTATAGCTCACCGGTTACAACAAGATGTGCTTGAAGATGCTGGCCAACTTCAGAAATTCATCGCAGATTCTATCACTCCAGACCAAGAAAATATAATACACATGAGAGGACACAAATTCAGTGTGACATGCGTCGTCATTTCTTCCGATAATAAATTTGTCTTCTCTGCATCTAAAGACGGCTCCATTATCAAGTGGGACATTACAACACACAAAAAACTCTTGAAAATCGATGGAGTCTCAAAAAAATCCAAAAGCGGCCAGAAAGGGCATAAAGGACAAATCTATACTATTGCAATCAGTTCTGATGTCAAATTTCTGGTGACTGGCGGGCAAGACATGCTCATTAATATTTGGAATGCTGCTGATTTGTCATGGCAACATACATTCAGAGGACACCGGAATATCGTGACGAGTTTGGCATTTCAAAAGAAACAGCATCAATTATTCAGCGCTTCACATGATAAAACTATCAAAGTGTGGAACCTCAACGAAATGGCTTACGTCGAAACACTATACGGTCACGAAGATGCTGTGTTGGGAATCGACAGTTTATCACGTGATCACGCTGTGTCGTGTGGCGGACGTGATCGATCTGTACGCTTGTGGAAAATCGCTGAAGAATCACAACTCATTTTTCACTCTTCAAATATATCTTCTTCGTTTGATTGCGTGACTATGTTAAACGAAGATTATTTTCTAGCCGGTGGTGATGATGGTTCTTTATCAATATTCAACGTACGCAAGAAAAAACCAGTGACATTACGAACAAATGCACACGTCAAAGGTGAAAATTCGCCTCCTGGTGGTTGCGATGAATCATGGGTTAGTTCGGTTGCGTCGCTACCTTACACTGATCTTGTCGCCACAGGCTCGTGTGACGGATGCATTAAACTATGGAGATGTGAAAAGTCGTTCAAATCTCTCATGCCTGTTCATACTATCAAAGTGAATGGTTTTGTAAATGGCTTGAAATTTTCGACAGGCGGTGAATACCTTATAGCAGCGATTGGGCAAGAACATCGTTTGGGTCGATGGTGGCAGATGAGAAATGTGAAAAACACCGTCTGTATCATCCCTCTGAAAAATGTAAATACGAATGGGGTTGAAGAAGACACGTAG

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q68CQ4	U3 small nucleolar RNA-associated protein 25 homolog OS=Homo sapiens OX=9606 GN=UTP25 PE=1 SV=2
Q8BTT6	U3 small nucleolar RNA-associated protein 25 homolog OS=Mus musculus OX=10090 GN=Utp25 PE=1 SV=2
Q5M9G7	U3 small nucleolar RNA-associated protein 25 homolog OS=Rattus norvegicus OX=10116 GN=Utp25 PE=2 SV=1

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|DWD

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF06862	UTP25	Utp25, U3 small nucleolar RNA-associated SSU processome protein 25	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001680	Repeat	WD40 repeat	Interproscan
IPR019775	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR010678	Family	U3 small nucleolar RNA-associated protein 25	Interproscan
IPR020472	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12933	ORF PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0000462	Biological Process	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0006364	Biological Process	rRNA processing	Interproscan
GO:0019843	Molecular Function	rRNA binding	Interproscan
GO:0032040	Cellular Component	small-subunit processome	Interproscan
GO:0034511	Molecular Function	U3 snoRNA binding	Interproscan