Gene detail

Detailed information of XP_066920950.1 in Clytia hemisphaerica

Genomic Location: NW_027103866.1:51813...77340
NR annotation: XP_047136787.1, probable ATP-dependent RNA helicase DDX23 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066920950.1

ATGTCTAAGAGAAAAATATACAATACAACAGAGGCAGTATCTTATATTTTGGAAGATTTGCCCTCAGATGATGATTTGTCTGATCTTGAGTCATCCGAAGACGATGATGACGAAATTGACCATTTAGCGGATAACGCTTTACCGGCAAGAGATAATGAAATGAATGATGACTTTCAGACTGTTCCTGATGATCAACTTGATGAAAATAGTGATGAAGTGAATGAAACTAGTGGTGTTGCTGAGTTACTAGCTGAGGATGATTTGACCGATGAAGGCAGTACGGACGACAACAATACAACTGATGGCGGTACGACCAGCGTTGACGCAAACAAACTAAGTACAGCTGCTGATGTCGTTGATGACCAAGCTAAAGGTGACAGTGGTAAATCATCTGATAGCCTTAATGGGAACTTTTTGAAGTTGTACGATGCATCGCGCTATCTCAGTATTGATGAAAGTATGATTTTATTCAAAGGGAGACACTCTATCAAGCAGTATAATCCTAAAAAACCAATAAAAAGAGGGTACAAACTGTGCATGATTGCTGACACTGATGGGTACATCAATAAATTTGATGTATACCAAGGAAAGTTTGAATCTGTCCCTGAAAATCTTAAGTCTTTTGGTCTTGGTGAGCGCGTAGTATTGAAACTTGTCGACCACCTTCATCACAAAGACCATGAGGTTTATATTGACAACTATTTCACATCAATTTCATTATTGTCTCAGTTGCAAACTGTTGGTGTCCGGGCTTGCGGGACTATAAAGGGGAACCGCAAGCATATTCCCACTAATCTGCAACGAGATAAGTCAATGCAACGCGGAGACTTCGATTACAGGCTTATCTTACGTCGATTGAGAGATGGTAGCCGTAAGGAATTTAACTGCCCGTTGGCAATAAAAGAATACAATATGTACATGGGCGGTGTTGATCAGGCAGATTTCAAGTGTGCGGTCAATGGCCTTAGTCGGAAATCGACAAAATGGTGGCATCGGATTTTTTTTGGATTGCTTGACCGAACTCTGTCAAATGCATTTATTGTCTTCAGAAAGCTGGAAAACAACAACATGCCCATGTTGAGTTACCGGAGACTTGTTGTTCAGTCACTTGTTACTTTGTCAAAACCGCCGAAAGTTGGTCGACCACTTGGCAATTCTCCCTTACCGGCATCCAAAAAGCGGCGGAAAGCAGACTATTCCGTTTCAAAAAGCATTAGATTGGAGAATAAAGTCAACTCAGTCAAACCAGCACAATCATCTCAGGGAAAAGTTAGAAATCACATTGAGAAAGTGGAGAAGGTCCAACCAGCACAAGAAGTTAAGAGAAATAGCACTGCTTCAGTGGAAGATATCAAGAAACAAGCTCGTATTGAAGAATCTCATCGAAACAAATCTTTCGAACCAATCCCTCCTGCAGTAAATGGCTTAGCCGAAAACCACATTACTCCATCGCAAGAAAGGAGCTATCTAAACCTGCAAAACTCTACCGGTTATTACTTAGGTCTCGTGGACTCTCCTCTTGGGCCAGAGGAAATGGCAGCTTGGTTGAAAGATCCCTCCCTGGAATTGTATGGAATATTAGTACTTTTTCGGCTGTACCAGTCTGACTACAATCAACTTCTTCCTGGGGATCCAACACCTATCCAGCGGCAAGCTATACCTATCGGATTATTGAATCGGGATATTATCGGTATTGCTGAAACTGGTTCTGGTAAAACAGCCGCTTTCGTCATTCCTCTTCTTGTTTGGATTACAGGTCTTCCCGAAGCTGACAGAGCATCGGTGGGTGATGCAGGTCCATTCGCTATCATTCTCGCCCCTACAAGAGAATTGGCTCAACAGATCGAAGAGGAAACGTTAAAGTTCGCCAAGAAACTTTGTATACGCACTGTCGCTGTTATTGGTGGTCTCTCAAGGGAAGATCAAGGTTTTCAACTACGACTTGGTTGTGAGATTGTGATTGCTACACCTGGTCGTCTCATCGATGTGTTAGAGAACAGATATTTAGTACTTTCACAATGCTCATACGTGGTTATGGACGAAGCTGACAGAATGATAGATATGGGTTTCGAACCAGACGTCCAACGAATCTTGGAGTTCCTCCCCGTCACTAATATCAAACCCGATACTGAAGATGCTGAAAACCCAGATTTCATCGCCTCCAATCTTAGTGCACAAGAAAAATACCGACAAACTGTCATGTTTACAGCTACTATGCCTCCCATTGTTGAGAGGCTTGCAAGGACTTATTTACGACGTCCTGCTACTGTTTACATAGGATCTGTCGGTCGCCCCGTGGAGCGTGTTGAACAACGAGCATATATGCTCACTGAATCTGCTAAGAAGAAGAAACTATTGGAGGTTCTTGATAATGCTGATGATCCACCCATCCTGGTCTTTGTTAATCAAAAGAAGGGTGCTGACGTTTTGGCTAAGAGTTTGGAAAAACAAGGGTATCGTGCATGTACATTGCATGGCGGTAAAAGTCAAGAACAGAGAGAGTTTGCTCTTGCAAGTTTGAAAGACGGTTCTAAAGACATCCTGGTTGCCACAGATGTTGCTGGTCGTGGTATTGATATTAAGGATGTATCTCTGGTTATCAATTATGACATGGCCAAATCTATCGATTGTAATCATTATTTTATTGTTTAT

Transcript

Protein

Uniprot

Uniprot term	Description
Q9BUQ8	Probable ATP-dependent RNA helicase DDX23 OS=Homo sapiens OX=9606 GN=DDX23 PE=1 SV=3
Q5RC67	Probable ATP-dependent RNA helicase DDX23 OS=Pongo abelii OX=9601 GN=DDX23 PE=2 SV=1
Q7SEL0	Pre-mRNA-splicing ATP-dependent RNA helicase prp-28 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=prp-28 PE=3 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF13843	DDE_Tnp_1_7	Transposase IS4	Domain	Interproscan
PF00270	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027417	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR000629	Conserved_site	ATP-dependent RNA helicase DEAD-box, conserved site	Interproscan
IPR014001	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR001650	Domain	Helicase, C-terminal domain-like	Interproscan
IPR029526	Domain	PiggyBac transposable element-derived protein	Interproscan
IPR011545	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR47958	ATP-DEPENDENT RNA HELICASE DBP3	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0071013	Cellular Component	catalytic step 2 spliceosome	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0005524	Molecular Function	ATP binding	Interproscan