Gene detail

Detailed information of XP_066920957.1 in Clytia hemisphaerica

Genomic Location: NW_027103871.1:38969...94970
NR annotation: XP_047146813.1, echinoderm microtubule-associated protein-like 3 isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066920957.1

ATGAACACACCACAGTATAAAACAAAAATTGTAGCTGGGAAACTGGTCACTGTTCCTGTTTTTCCATCGCAAGCTTACCGTGACAATGACATTGACAACGATTTTCGAAGGAAACAATACACAAACACTCATCAAATACCATCACATGGTCAACAACAACAAGAACAACCGTCAAGAAATGCTCGATTAGAAGCACAAAGAAATAAAGCAAGAGCTCTCCATCAAACTTATCATTCTGTACTTGACCCTGAGCCCAGAGAAAGAGGTTTGTCACCAATCCAATCCAATCCATTTGTTATTGGTATTGTATCTGGCATCGTTTCTCAATCAAGACACAAACTGTTATCAACACTTAGTTCAATGAGGCGACGTGATCCTAGTGAACATGGTCTAGTGACTCCTTACGATGCACAAGATGTGTTTACACTTCATAATCTCAATTTTGACGATCGGACAAAATATCATCTTCTGGAACAATATACTGTCAATGGAGGAATGGTGGATTATAGGAACATGTGGAAATTTGTCATGGATTGTTATTCGAAGAAAGATCAGATCGATCTTCCAACACGAGAAAGCCATAACCATCACCATAACGATCACCACAAGTTTGAAAACCAACAACAACGACAACATCATCTTCAACGTTATTCCCACATGAACAACAATAATGATTATAGATATAGTAATTCGCCAGATTTGATGAAGCCAGGGTTAACAGCAGAATTAGAATTTGAACTTCGTCAGTATGCAAGAAGCCATCAAAAACGATTGGAGACAAATCTTCTTGAGGGAATGTTTCACACATTAGATAAACATGGAACTGGAAGGCTATTAAAATCACAGGTTCAAACCCTTTGTGAGCAATATCTCCATGGCATTGACCGCAATGTCATTTTATCCACCTTGACTGTTTGTGATGCAGGTAACACTGGTATGGTGAGTTACCAAGAGTTTTTGCGTTTGGTGAAGACAGCTCAACCGACATACCTTCCCCCTTTATCAACATCTGCACCAAACCTTATCAATATTGGGATCAACCATCGCAAAGAATTGCCACAATATACCCGACAAGAATCTCCTTATAAACAACTTGTGCATGAAGAAAAAGAAATCATTGATTATCTCCACCATATTTCGTCACCAAGAAACCAGCGTAAAGATATTCTTGGTAGCAATTACCTCCATAAGGTTCCTAATCATTTTGACCATCATCAACAGTTTCAAGAGAACGAGGAAGTTGGTCAGATTCCGAAAGGTCATTCTCAACAACTTGAAGCTCTCGGCATGATCGGAGTTCATCTAAGCGATTTCGAGACGGAGGTTCATCAAGAAAGGAAAGCTACCGACACTGAAGCTGAACAAAGCGAAAAAGAAGAAGAATCGACGCATCGTCCTGCAACGTACGACTTAGGTCCACGTCAAAGGACTTTTGATGGAAAAGGCGATAGAAAATATGGTTCCTCACCCTCAAGACAACGATCCATGCATACTGGTGTTCAACGCCCACGAAGCTCAAATAAAACGCCCACACCCTTTATCAAAAAGAGCCCTTTACGCAAAACATGGGAAAACTCAACAAAGGTTTCACAAAAGAAGACAAATAAATGGGGTACTCCTTCATCGCAGAAAGTTGAAAAATGGTGGAAAGAAGGAATGCTCTTATCTGAAGGAATCACCACCGATGACGACGCAACTCTCACAAGGGAATCCTCATCACCTGTGTCAAGGGAATCTCCTTCGAATAAAACATGTCTTCCTACAATTTCGACCGAGTCTCCATTGGTGGTAAGGGAATCGTCTTCGCTCGAGACATCCCCTCAACGTAAGAAATGGGGTGATTCCCATAGAATCAAAACGATGAAAGGAAAGAGAAGAAAGAAACTCGCGAAATCTTCGAAAAAATCGAATAAAAGTTTAAACAACACAAGTTCTGAATCGGAACAAAAATGCAACACGGATTTCGATTCGGAGTTTTATACAACCACGGACGTAGAAATCGGGGAAATCGGGGAAACGAAACGTCGACATCATCAACAAAATATAGAACAAACTTCATCGATGACATCGAGTCCTCAACAATTCGAATCTGTGGATAAGTTTGTAAGTTCCAACAAACCCAATGATGAAAAGACTACAATTGAAAATGAACTCGTATATGACGAAAATACCACTTTAACGGCCGTAAAGTTAACAGAACACTCAAAGAACGGTAATGACAGCAATCCAGACTCGCTATCAGACAAAAAGACATTCTTAAAGTTGAATGACAAAAGCAAAGAAGGTTCTACTGTGAACATGTTACCATCAAGCATTCCAGCGGATAGTAGTGCGGTTAAAAGCAAGGATACCGATATGACAGATGTTACCAAGGCATTGGAATTACAATCGTTGTATAGAGATTCACAGAGGGATGATAATCCTTCCAGTAAACCAGCAATTGTTGAGATACTTGGAAGAAGATATGAGCTATTTCCAAATCGGTCCGCATCATTCAACGATGAAGAGTCAAACCACAAGAAAGAATATGCTTTGCAGTTGGATTGGGTATATGGTTTTGACAGTCTTGTTGGCATCGAAGCTTCATCAACCAATCAAGTCCTTTTCACCTGTGGCCGAGTGGCTGTTACCATGGATACAAAGCAACACAATCAAAGATTCTTTCGAAAACATTCTCAAGATATCACTTGTTTCGCTTTACAAGACGATACAGCAGCAACAGTACAATTTTGGGACGGTAAAAAGTGTATAGTTTATGTATGGAGCACTGTTGATATGGCAACCATCTCCACTTTGTATGTTGACCAATACGAGGCTGCCATTTTCAAAAAGATTGCTTTTCTATCTGAGACGTTGCTGGTAGCCATCATAGAAAGTGGAGGGGTCAACCTTGGATGTATTTTCAACGTCAAAGACAGCGATCCTGTTTCAACAACGAAGATACCTGATGCATTTAATGGAATAACAACTTACTATCAACCAACAGCCACCAATGTCCACTTTGTTATCTTTGGAAAGGATGAATGTCGACTTTGCTTTTACGAATACAACAACAATCACATTATATCAAATAAGGCAGCGAACTTCGGGACCTTACCTAAACCCAAATCTATCACCTTCGCATTATTCAGTGGAAAAGAGGATCTGCTCACAGGTGACAGCAATGGAACTATATTGCTATGGAAACGAACAACATTACAAATTGAACGTGTTGTCAACAATGCGCATGCGTCTTGGATATCTTCAATGTGTATTTCACAGACCGGAATTTTATTCAGTTCGGGCAACCGGGACGGTGTTGTGAAAGCGTGGAGTAGAGACTTGAAACAGGCTGTATCAATAGTTTCGATATCGAACTACAGTGAAAACATAAGAAATATGACCATTTTTAACGAGACGATATTTTTGGGAACTGGGGACAATAACATACTGAAGATGAGCATCGAGTTGGGTTGCAATGATCCTTTGCGCGAGGCGAAAGATACGCTGTGCATTGTTAATGAGGGTCAAGATGACGTCATCAGTGGTCTGGCAACAGATCCAATTTACAAAGAAAGCATGTGTAGTCTTTCGGCTGACGGCACTTTGTATACAATCAACGTCCAAACCAAAAGTGGCACCAATAAAACATCGGTCAAGGGGAATGGGTCTTGTGTTTGTTATCACCCATGCAAAGAATATACTTTTATTGGATGCAAAGATGGAAGCATTCATTTGTTGGCCTCTGTGACTGGTGTTTTGGTTGATAAATTCAAAGATGTTTATACCTCAATCACTTGTATACAGCTGTCATGTGACGGTTCCAAGCTAGCCTGCGGAAGCAGTAATGGTTATTTACTGATCTACCATTTTGATGACTCAGCAAAAATATTGGAATTGCTATTGAAAACAAAAATTTTTGGTGATGAAGTACATGGAATTGATTGGACATACACATGTCACGTGGTCCGGTTGGAATCAGCTAGTTTACAAATGGTTTTATATGACGTAATGGGGAAGCGAGAGATCCAAAACAATGAAAAGTTAAATTGGTCTTCCATGAATTGTCTCGTCAATTACCAAAACAGAGATTGGTTGCCAACCTGGGATTCCAATGCAACAACAAATGAATTGAAAGTTGCCCATCACACAGGAAAAGGAGTTTCAGTCAGAGCAAATAGGGATAAATTGGTCCTTTCTCCATTTTCTAGATCACCAATTAAACATGAAAAGACGTTCACCACAAGTAGTTGTTATGCGTCATTCAATCCTTCAGATGTCCAGTTTTCTTGCGATGGATCGTACGTATTCGTGGCTTATGAAAAATCAAGTTGTTTGTGGCAATGGAAATTAGTTGAACGGTGA

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q8BQM8	Echinoderm microtubule-associated protein-like 5 OS=Mus musculus OX=10090 GN=Eml5 PE=2 SV=2
Q05BV3	Echinoderm microtubule-associated protein-like 5 OS=Homo sapiens OX=9606 GN=EML5 PE=1 SV=3
Q6ED65	Echinoderm microtubule-associated protein-like 5 OS=Rattus norvegicus OX=10116 GN=Eml5 PE=1 SV=2

Gene family	Subfamily
Ubiquitin Family	UBD\|Other\|Beta-prp
Ubiquitin Family	E3\|E3 adaptor Cullin RING\|CDC20

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011992	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR001680	Repeat	WD40 repeat	Interproscan
IPR036322	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR050630	Family	WD repeat Echinoderm Microtubule-associated Protein-like	Interproscan
IPR015943	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR011047	Homologous_superfamily	Quinoprotein alcohol dehydrogenase-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13720	WD-40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K18595	EML1_2; echinoderm microtubule-associated protein-like 1/2	-	Cytoskeleton proteins	ko04812	deepkoala