Gene detail

Detailed information of XP_066920965.1 in Clytia hemisphaerica

Genomic Location: NW_027103874.1:97248...114559
NR annotation: XP_047129870.1, hemicentin-1 isoform X1 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066920965.1

ATGCATGGAAAACGTCTTGGTTTGTTGTTGATGCTTGGGTTATTCTTTAATTCAGATTGTGCAGAATGGCAATCTAGATTTAAGATTTTCCAGGTTCAACACGGACAAGATGCTTTCATGAAGTGCAAAGTCACTGGAACATTTGATGGTTTTTACGATAGCAGTGGTCAGCTAATCAAGGACAATGATAAATTTAAAGTGATCAACCCAACAGATGGTTCAGATATTTACACTCTTGATGTCATCGCTGTTGAGGAATCTGATTATGGCGATCTGATTTGTAGAGACACTACATCAGATGATACGGCTACCCTGGAAATTGATATTTCAATTGAACCAATCAAGGATGCAAATTTGGCCATCGGTTTTGAAGGTGTAATCAAGGCTGAGGTCTTTGGCATGCCTCGAAAACAAATGGAATGGAAGAAAGGGACAAAGAAAGTTGCAATCATGGACAACTCTGGGAAGATTATTCTTAATGAACAGAACCGCTATTCCATTGATCCGAGAGGTTCTTTGATCATCAAAGAAGTAGTTGCAGAAGACAAGGGAGACTACACTTTCACTGTTGTCAAAGATTTTTCCAGAGATAATAAACCTGTTATGGTTGATACTGGAATCAAACCAACCATCAAGACAGCACCTGCTGCCTCGTACACTAAAACAGCTGGTTTAGAACTGAAACTCAATTGTGAATGGAATCTCAATGATGGAACACCTAACTGGACTTTCACTCCATTTGGTGGCAACACGTCCACTGAGGTTCCCGCTAACCAAGTTGATAATACTGGGTTGACTTTTGCAGCTGTGGAAACAAGTGACGAGGGAGATTATGTTTGTTCTGCTAGTAACAAATATGGAGAAACTAAAGTTTCAACAATGATCAAATCTGTTATTACTCCACCTGAAATCACTTCAGACTTTTTGGACACAAAGCAAGTTGTAGGAGATGTTTATGAACTGTCTTGTGAAGCATCTGGTCGGCCTTTACCAACAGTCAACATTTACCAGGGTGGTGTATCTAAAACTACTGGCATTGGAAATACAACCTTCAACGTCAAAGTAGCACTGGCTGCAAACGGGGGTTACATCACCGATTACAAGTGTGTTGCCGGAAACGGAGCTAAAACGGATACAGGCGCTGACAGAGATGCCGAGAAAAGTATGAAACTCACTATGCTCACTCCTCCAACTATTGAAAAGATCACTGATGACGTCCAATCAGCTATCGGTTTAAAATTCTCCATCGAGTGCGTTGCCAATGGTAACCCCATGCCAACTGTCACTCTCAAACAAGGAGGAGTGGATCTAGTGCCCGCTGATAGCAAAACAGACACAACCTTGATTAACAAGCGAACTGTTCTTTATGAAGTGTCTTCGGCAACTAAAGAAGATTTTCAAGACATTGACTGTATAGCTTCTAATGATATAGGAAGCACTAACAAGACAGTTAAGCTTATTGAAGTTGTGAGAGCTGAACCACCCGATGGCTTAGAACGGTATGGCGATGCTGGTCTTAAATATATTGTCTTGTCTTGGGACAAAGTGATGTCTGCCGACAGTTACCTTATATATGTAAACGACACTGAACCACCCAGAACCATCAAAACTGACGAAACAAGTCACCAGGTTCAAAACTTGAAACAGAACACAATTTATCTGTTCAACGTTGCCTCGGTCAATTTGGCCGGTGTCGGGGCTAACACGTCTATAGTATTGTCTACGTCAGACATCATTCCCCCAGGAAATGTAACAAATGTTCAAGCCAGTGATTTAACAACCACTACCGTGCTAATCCGTTGGGAACAGCCTGAAAACATTGAAGGGATCGACATCTTATACCGTATATCGTATTGCCAACTCAATAACGGTACATTGGTTGGTGCGTGTAAAAGCGAAGACCAAAAAGACAATTCTTTACAACTGACCGACCTTGAAGTTGGATCGACGTACCAAGTCAAGATATCAGCTGTTAATCAGAAAGTGGTTGGCCACCAAACTACATTCAATTTCACAACACTAGAGGAGAAAGTGACGCCTCCGCCACCCGCGCCTACCAATAAAAAGAAAGGGATGTCAACAGGTGCGATCGCAGGTGTCATCATCGCTATACTTCTCATCATTCTGTTGGTGGTGGATCTCTTCTGTTGTTTCTTCAACCAATGCGGTTTCACGCACTGTTGTACGGAAACATTCTGTGCAAACAAATCAGCAAAATATCAACCGACTGATACCAAGGACGGTGAGAATATGGATGAGACAGCAGAACTAAAGCCTAAAAACATTTCGAAAGAAGATGTTGTATGA

Transcript

Protein

Uniprot

Uniprot term	Description
Q96RW7	Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2
Q8NDA2	Hemicentin-2 OS=Homo sapiens OX=9606 GN=HMCN2 PE=1 SV=4
F1NWE3	Receptor-type tyrosine-protein phosphatase S OS=Gallus gallus OX=9031 GN=PTPRS PE=1 SV=3

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00041	fn3	Fibronectin type III domain	Domain	Interproscan
PF07679	I-set	Immunoglobulin I-set domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003961	Domain	Fibronectin type III	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR007110	Domain	Immunoglobulin-like domain	Interproscan
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR003599	Domain	Immunoglobulin subtype	Interproscan
IPR013098	Domain	Immunoglobulin I-set	Interproscan
IPR036179	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR051170	Family	Neural and epithelial cell adhesion domain-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12231	CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0043005	Cellular Component	neuron projection	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06491	NCAM, CD56; neural cell adhesion molecule	-	Glycosylphosphatidylinositol (GPI)-anchored proteins	ko00537	deepkoala