Gene detail

Detailed information of XP_066921830.1 in Clytia hemisphaerica

Genomic Location: NW_027103911.1:1674...22600
NR annotation: XP_002167600.2, SAFB-like transcription modulator [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066921830.1

ATGGCTGAAAGCCCTGCCGCAGAAGTTTTGAAAAAGCTTCCAACTCTGAAAGTTGTTGACCTCAGGCAAGAGCTAGAGAAACGAGGCTTGGAAAAGTCTGGATTGAAAGCAGACCTTGTCAAACGTCTGGAAAAGTCATTACTTGAGGACAGCATTAATGAAGAAACTGAGGATGACAATGAGGCTGTAGAGGAGGATAAAGAAGAGGAAGAGCAGATGGTTAATGGGAATGGTGTTGATGATGAAGAAGCAGATGAACTTGAATTTAAAGAAGGAGATGTTGATGAAGAAGTGGAAGAAGAAGAAAATGAGGCTGAGGGAGAAGATATAGCAAATGAGCAAGAAACTGAAAACGGTGATGTTGAAATGAATGATGAAGAGGAAGAATCTGCCAATGTAGAGGAAGAACAAGAAGCTGACCAAGATGAAGAGGAGGAAGCGTTAGTAGACGATCAACAAGAGGAAGAAATCGAAAGTGAAGAGGAGGCGGCTGACCAGGAGGAAGCCGAAGAGGAGACAGCTGACCATGAGGAAGCAGAAGCTGAAGAGGAGACAGCTGAAGATGAGGATGAGGAAGAAGAGGAAGAAATGGATCAGGAGCAAGACGTTGAAGGTTGCCAAGAAGAACAAGAGGAGGAGGATCAAGAGATGGAGGGTGATCAAGATCAAGAGACCGAAGCTGAAGAGGATGACGATTTGGAGTTAGATGATGCTGCTAATGAGGAGGAAATTCCCAATGAGGAAAATGACGAAAACGAACTAACTGAAAATGTTGATGAGGGAAATGAGAATATTGAAAGTGAAGGATCTGACAACGAGGAAGAGGAGGAAGAGGGAGAGGGAGAAAACGAATATGAGGATGTTGACAAAGAAATTGAAGAGGAAAATGAAACAGAAACTAATGAACAATCTACTGAAAATGACATTCATACTACAGAACAACCAACAGAGCAAGTATCTGAACCTGTTGTTGCTGAGTCTAAAGGATTGTCTGAGAATAACATTAAAGAAACGTCAGGAGATGATTCAAGTAAATCTGCTGAGGATAAAGAGACTGATAAAAGTTCAAATGAAAGTGAATCTGTTCCTGATACAAAAGAGAATATAGTTGAGCACCCTGACCAAAAAGACAGTAAAACTACAACTCTAAATGAAACTTCTAATGACTCTACTAAGCCTAAAGATACAATTACTGAATCGAAATCTGAACAAGCAACATCCAACGAAACCAACTCAACCAAAGACAATCCTATTGATTTGACATCTGAAAATGATACACCTGCTGAAAAGCCCAAAAGCTCTAATGAGGCCAAAGTTAATGATAAAAGTGCTACAAGGGAGAAGAAGACTGTTACCATAGAGGAAAAGAAGAAAGACTTGAGTAGATGTCTTTGGATAAGTGGATTATCCTCCATTACAAAAGCTGTCGATTTGAAAGAGCTTTTCAGTGCCCATGGCAAGGTCATTGGTGCCAAAGTTGTTACAAGTGCAAAAACACCTGGATCCCAATGTTTTGGTTTTGTTACTATGACAACTCCAGCTGAAGCCTTAGTTTGCATTGAAAAAGTTCATAAAACAGTACTTCATGAAAAGACCATTGAAGTTGAAAAGGCAAAAACTGATCCAACACCTGCAAAGAAACCTGTTTTAAAATCAAGTGACAAGAAATCAGATGACAAATCGCGTTCCAGTCGTTCATCTACCAGCAGTCGATCTTCAAGATCTTACCGAAGGAGTGGAGAAACTCGTTCGTCTCACCGATCATCGCGTGACGATTCCAAAAAGACCGGCTCGTCGTCTTCCTCGAAACGAGATTCGGAAAAGCATAAGAGCATTAGTTCTAGACACAAAGACGATAAAAAATCTGACAGTAAAGCTGAAAGCAAATCCGATAGCCGTAAAGCTGAAAGCAAATCCGATATCAGTAAGGATAAAGATCGTAAAACTTCTTCCTCCCGAAGCAGTACGTCTTCATCTTCCAAGAAAGAGAGCTCTTCCAAAGCTAGCTCACCATCTAAGAAAGACTCGAAGAGTAGCTCGAGACGTAGTTCGCCTTCGAAATGTACCAGTAGCAGTCACCGCAGCGCTTCGAAAGATAAAGATAAAAAGACAGATTCTTCTAAGAAATCTGATAGAGATTCTCAAGAGAAATCTGAACCCAAAAAACCGTCTAAATCGATCGAGGAACTTGAAAAAGAGAGAGCTGAGAAAATTGAAAAAGAGCGTAAGTTACGGGAAGAGCGTCGAGCCAAAGAACGAGAACGAGAAAAGAAACTGCGCGAAGAACGTCAAAAAGAACAAGAAAAACGTGAAAAAGAAAGACGAGAGCGTGCACGAAAGGAAGCCGAACGCGTCCGAAAAGAACGAGAAAAACAACGAGAATTGGAGAAAGCTCGTGAGCGAGAACGTGAAAAGGAGAGAGAACGTTTCATTCGTGAACGTAAAGAAAAGGAAGAGAAGGAGCGCAGAGAAAGGGAACGCGAGAGAGAGCAAATCGAAAGAGAACGTCTCGAACGAGAGCGTCTTGACCGCGAACGAAAAGAAAGAGAACGACTAGAAGCTGAACGTATGGAACGTGAAAGACAAGAACGCGAAAGATTAGAAAGAGAGAGACTTGAACGTGAAGCACGTATTGAACGAATTGAAAAGGAAAGACTTCGATTGGAGAACGAACGTCTCGAAAGAGAGCGCATGGAGCGTGAACGTAGACCAATGGATAGAGGAATGAATCCAGGTATCAAACGACCGGCTGCTGGCGATCATCGATACCCTGATAATAAACGTAGTTATCGCGATGAGCCACCTCAAGATACGAGAAAGCCTTTCTTCGGAGGTGCAGCCAATCCTACCGACGCTCGTGGCAACCTTCAAGATGATGTTTACGACATGGCCTATCGTAGAACTGTAGTAGACTCTCGCAATGAACGACCTTATCAACGCGAAAATGAAGTTCGTAGACGTGATTCTCGAAGATACGAACCAGCTCCTAAAGAAGGTGCCGATATTCGACGTGTTGTTGACCGTTATCCGCAAACCCGCGAGCGCTCTCCGCACCGTCCCCAATACGAGGGAAAAAGCGATCCCCGATATAATGACCGCCCATCAGAATACGAGAGAGAAAGAGGAAAACCCTGGTTAAATGCTCCAAATCCAAACGCTCCTAAAACGTTATCCGATGTTCTCGGACGTGCAGGCTTGACTGGAATCCTTGGGTCTCAAGCTGAAAATGAACCTCGAGGTGGAGCAGGTTACGGACGCGAAGAGCACCGTGGTTACGATGACGCCAGAGGTGAAGACAAGGATAGAGACGGATACCACAGAGAAGCAGCTAGAGACAGCCACCATAGAGAGCCAACACGTGAGATCCGCCGTGAACCATTACCACAGCGTGAAAGCCATAGAGAACCGCAACGAGACGGTAATCCGTACAAACTAGACAACCGTCGACCAGATGATCGCCATGGTGCGCATCCCTCAGAACGCCGTGAATCGAGAGATGGTGCTAATTATCGCGAGGGTGAGCGTCGCGACCCAAGAGGGGACGAGAGACGAGAGCGTTACGAAGAGCGACGTGATGCTCGAAGAGAACCGGAAAGAAAAGATTCGTATCATCCTGACGGTAGAAAAGAACCTTATCAAAGGCGTGAAAGTTTTGATCGTAAAGATCCCTACACCGCTGATCGTAAAGACCCTTACGCACCAACTGGACATCGTAAAGACTCTTACGCGACAGAACGTAAAGAATCGTACGTCGATCGGGGTAAACTAGCAGCCTCGAATGCCCGTTACGAACCATCTCGTGAGCATCGCCGTGATGACAGACCTCGTGAAGAACGAAGAGAAGGTTATCGCCACGATTCCAAACCAATCGACCGAGGTATCAATCGTCAAAATTCAAGCGGCCCAAGAGCTGGACGTCCCGAGCCTGTCTCCATGACTGAAAGGCGTGGTCTTCATCCACTTGCAGCTGAGATGGCTTCACGACCATTACCCGGTATCGTACAAGCTGCACCTCACGTCAACCCACCACCTGCCGATGCTTTCCGAGGTTTGACCCGTGTACCACCACCAGGTGTCACCATTCAGCAAGGTTTCCCACCTGCTGGATCTCAAGCTGTTACAATACAAGTACCACCCTCCATTCAATTGAGGGATGGACGCTTGGAATTCACACGTGTAGTACCACCTGGTGCAAATATTCAACCCTTTCCGAGGCGATTTTAA

Transcript

Protein

Uniprot

Uniprot term	Description
D3YXK2	Scaffold attachment factor B1 OS=Mus musculus OX=10090 GN=Safb PE=1 SV=2
O88453	Scaffold attachment factor B1 OS=Rattus norvegicus OX=10116 GN=Safb PE=1 SV=2
Q5R452	Scaffold attachment factor B1 OS=Pongo abelii OX=9601 GN=SAFB PE=2 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02037	SAP	SAP domain	Domain	Interproscan
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR003034	Domain	SAP domain	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR036361	Homologous_superfamily	SAP domain superfamily	Interproscan
IPR051738	Family	Scaffold Attachment Factor and Modulators	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15683	SCAFFOLD ATTACHMENT FACTOR B-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0050684	Biological Process	regulation of mRNA processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K25092	SAFB; scaffold attachment factor B	-	Spliceosome	ko03041	deepkoala