Gene detail

Detailed information of XP_066922392.1 in Clytia hemisphaerica

Genomic Location: NW_027103289.1:1088930...1120030
NR annotation: XP_047122868.1, FYVE, RhoGEF and PH domain-containing protein 2 [Hydra vulgaris]
Species abbreviation CHEMI · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

XP_066922392.1

ATGAGATTCAAAGAAAAGTCTGAGACTACTTGGTTTACAAGCGTTTCTTCCCAAAGTGGTGGAAACCAAGGTGGGACCATGGAGAAAGCACGGAAACGTCAAAAAATCGCTCGTTGTATGGTCCGCTTTAACGCTCTCAACGAAAGTCGACCACGTACGGACGTCGGGCAGCCCGTGTTGTCGGAGAAACGGCGATGCGTAACACTTTATCACCCAAGAGAGCCACCGGAACTTCATAGAACTGCTTCAGATCCTGACTTATACCGTCGATCTCAAGAGAATTTGGCTGGTCCAGATCCCTCAGACAATGGCGATCACAGCGGTACAGAGGATGAAAAATTTACAGAATACACAGCGGTTGGTTCACACGAAGACATTCACGCTCTTGCAAAACAAATCTCCGTTCAAGAAATCTTAACGAACTTTGAAGATAAAAATCATCACGGTATACGAAAACCTATTCCGAAACCTCGGAAATCGATACCGTCAATTTTTCAAGAACTCAATACTAATAAAAATGGTGACACCACTACGGTGGCAAATGAACAAAAGTCTGATGATAGTGATAATGGTAAAACTGAAAGTCATAAGTCGAAACGACCTAAACCACCACCGCGACCCCCGTCGGAAGACAAACCGAATATTAGACCCGACGAGAAGCCGACTATTGCTACTAAACCGAAAGTTCTCCCGAAACCGTCCTCAAAACCCCCGTCTCCTCCCGTACCAGATACACCGTCTTTAGATCAAAATTGTGTCAAGGAGGACCAGGCTTCAGACAAGAGGGAGCCAGCCACAGACAAGAAGGAGCCAGCTACAGACACTCGTGAATCAGCTACTACCATAAATATTGAATATAAAGTTTCAGGTGGCGTCACCCCAAATAATAAAGACTCTAAAAAAGACAAAACAAAACTGAAACAGAAATCCACGAAACCAAAAAGTTTTGACTCAATGCCTGAGGCAGTACCTTACGAGGTAGTCAACATCTGTACCCCACAACCTACATCGGATGATCTATATACCGAGATACCGACTGGATCGAAAGTGTATGAAGACCCCGAGGAGGAATACCTCTCACCTGTAGATGGCAACTCTTCCTCTCCGGAGCCTCCAGAGACCCCACCGGCTACTTCCACCAACCATTATGCAACACCAAGCAATAGTGGCACCACCTCAAAGAGCTCCACATTACGCCAGCTTAAAGAAAAAAGACAAAAGTTTAACAAATCAAAGTATTCTAAAAGCATGGTTGGAGGAAGCGATAAGAAGAAGCCAGCCTATGACCCTAATAGAAGACGTACGGTACCGGACCTTCCAGCGTCGTTGGCCGATGAAATGGGAGCCAGAGACCGTCGGCTCAGTGAACAGCAAGAAATTCCGATTTACGGTAACAGCGATGTCGTGTCACCATCGCCGTCCGACGACGAATGTTGGAATTCCGACGAATTTGAATCGACCGATGACGAAGATGACGCCGACTTTTCGATAAATGACGGCGATGAGACGCAAGAAAGTGGAGTAACTGAGGAACCAATCCCTAAACTGCCACATTTGGAAGGAGTGAAAAAGAAATTGTACAATATTGTGACTGAAATCCTAACCACAGAAAGGGCGTATGTCAAAAGGTTGTTTCTATTGAATCAGATTTTCAACAAACGATTCATAGAAGCGTCTAAAGAAGACTCTAACATCATCACCGATAAAGCGGTGGCTGACATCTTTCCTTTCCTTCAACCTATCTACGAATTCCACACTAAAACACTTTTACCTGCAATAGAAGAACGGATAAAAGACTGGGAAGAAAAGGAACAGATAGGAGACATATTTCTGAGGCTTGGTGCCTTTCTACTGTTATATCAAGAATATGTCAAGAAATTCGACAATGCAACATCAACCCTCAGTCATTGGCTTAAAAAATCACCGAAGTTCAACACCATAGTCGAGGAATTGCAGAAAGACCCTCGTTCAGAGCATTTATCATTACAACATCACATGTTAGAACCCATACAAAGAGTTCCAAGATACAAACTACTGCTGGCAGATTATTTGAAGAGACTACCTGAAGATTCAAACGATCAAAAAGATACGCGAGCGGCACTAACGATCATTTCGAAAGCTGCAGAAAGTTCGAATAACTCTATGAAAGAAAATAAAAAGTTCACCAGACTACTTGAGATTGAAGATCGGATAGTTGAAGGTTTGCGAGAAGGACTGGTACTAGCAAGTCGGGAATTTTTGAAGGAAGGTGAATTGGCAAAACTAGCTGCACGTTCTGGAAACAAAAACAAAAGGATACTGATTCTGTTCAATGACATGTTATTATGTTGCATACAAACGCCGACCGGTAAACTGCGCGTCCGACAGAGGTTGGATTTACATCATCTGTGCATCATGAATGAAGAGCCTGATTTACCGGAAAATTCATTCAGTATCAAAGGAAAACAAAAGGTTTTGGATTTCCAAGCATCTGATGAAGACGAGATGAACGAGTGGATGTCTTCTATACGAAACGCTGTCCATGAGTTCGAAAGAAAAAGAGGAACGTACATCGAAGCTCGTATGGGAGAAGAAGAAGGAAGCATTGTGATTGGTCAACAAGCACCCAAATGGGTCAAGGACGATAACGTTTCGATGTGCATGCTGTGTGCTTTCAAGTTTGGTCTTATAAACAGGAAACATCATTGTCGTGGATGCGGACGGGTTGTTTGTGGAAAATGTTCAGCTTACAAAGCTCATTTATCGTACGCAGATGCCCTGCTAAGGGTGTGTTATTCGTGCGCCGTCAAAATGGGCGTGGCATCGGAGAAAGATAAAGTGAACGAAAAATTGAATAATAACGTCGGGAAAAGAGATTCGGGGTCAACTTCAGATATGCACGGTGAGATGTACTGGAAAGCTCCTAACAAAGAATACAAAAAGCAATGGATATTCTTGTCCAATTTCGCACTTTATATACAGAAAAAAAGACAAGATCCGAAAGCACTTCAAACATTACCCGTTCCTGGATACACTGTTGACCTTCATAACCAGGCGGAGGACAGCGAAAACCCATATCCACATTACATCAAGATACACAAAAACAACAAAAAAGAATTCTCATATTACATCGCATCCGACAACAAAGAATCAATCAAATTATGGTACAATCACTTAAAATGTGCAATTAATCTTGAGACGTACAAAGGTCAACAAAACGAAGACCCGAAAGAAGAAATAGAACAACCAACGCCCAGCACGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O88387	FYVE, RhoGEF and PH domain-containing protein 4 OS=Rattus norvegicus OX=10116 GN=Fgd4 PE=1 SV=1
Q91ZT5	FYVE, RhoGEF and PH domain-containing protein 4 OS=Mus musculus OX=10090 GN=Fgd4 PE=1 SV=1
Q96M96	FYVE, RhoGEF and PH domain-containing protein 4 OS=Homo sapiens OX=9606 GN=FGD4 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001392 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00621 all species →	RhoGEF	RhoGEF domain	Domain	Interproscan
PF01363 all species →	FYVE	FYVE zinc finger	Domain	Interproscan
PF00169 all species →	PH	PH domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000219 all species →	Domain	Dbl homology (DH) domain	Interproscan
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR001849 all species →	Domain	Pleckstrin homology domain	Interproscan
IPR011011 all species →	Homologous_superfamily	Zinc finger, FYVE/PHD-type	Interproscan
IPR000306 all species →	Domain	FYVE zinc finger	Interproscan
IPR017455 all species →	Domain	Zinc finger, FYVE-related	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR035899 all species →	Homologous_superfamily	Dbl homology (DH) domain superfamily	Interproscan
IPR051092 all species →	Family	FYVE, RhoGEF and PH domain-containing	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12673 all species →	FACIOGENITAL DYSPLASIA PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005085 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0005089 all species →	Molecular Function	guanyl-nucleotide exchange factor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007010 all species →	Biological Process	cytoskeleton organization	Interproscan
GO:0046847 all species →	Biological Process	filopodium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for XP_066922392.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.