Gene detail

Detailed information of XP_066922873.1 in Clytia hemisphaerica

Genomic Location: NW_027103962.1:332315...339149
NR annotation: PIK38944.1, putative arachidonate 5-lipoxygenase [Apostichopus japonicus]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066922873.1

ATGTTTGGATCAGCAGGCAAACGTTATCGAATCAAAGTAACAACAGGAAAAGCTAAAGGCTCCGGAACAAATGCAACTATCAAAATCAAACTGATCGATCACGAAGGAAAACATTCAGAACAACACGTCCTTGATAAATGGCTTCACAATGATTTCGAATATGGGCACGTGGATTCTTACACTATGGTCACTGAAAAACATTTCGGTCGGGTTGAGAGCATCGTTTTACATCGTGACGATTGTGGAATGAACGACAGTTGGTTTGTGGAACATGTAGCTGTCGAACACGACACCGAAGCTGATGTCCATTTCCCTTTATCAAGATGGCTGCCTCCTTACAAAGCAATGCAATTCAACAAGTTTGATTCTCAACTACCACAAATGGTGAAAAAGAACTCTCCTGAACTTTACAAGCAACGTGAAGCAGAATTAGAACGAAAGAAAAAGGAATTCGCCTATCAACCTATCGGTGACATCAAAGGAATGCCAAGAACTGTCAAGACTTTACCGCCTGAAGAAGCGTTTAGCAGAGACTACTTTGCTGAAGTGGGTTTCACTGGATTGACAGGGAAGATTTCGGATTCATTGAAAAAGATGAGATATGAAGATGAATTTTCGTCATTTAATGATATTTACAAAGTGTATGGTGGCCCGTTATCACCTTTCAGAATCCCTGACGGTCATGCTGCTTGGCGTACAGATGAGAAATTTGCACAATTAAGATTGACTGGACCAAATTGTACGGTGATTCGTGGTGTCTTAAAAGATGGTGGATTACCAAGAAATTTTGCAATCAACAAATCACTCTTGGAAGAGCATTTCTTGGAAGGGCAAACATTCGACCAAGCCTATAAGAATGACCGTCTCTTCTACATCGACTACAAAGATTTGAGTGGCTACATTGCTAAAGCTTCCAAAGAGCGCATGGTAGCACCTATCGCACTTTTCTATACAAGGATGGACGGCACTTTAATTCCATTGGCAATTCAATTGTTCCAAATCGCATCAAAAAGTAACCCAGTTTTCTACCCACCACCAATCGACGAAGAGCGAGTTTGGTTACACGCGAAATTTTGGTTTGGCGTTGCTGATTCTAATTATCATGAGCCTGTCACTCACTTGATGGGCACACATTTGGTGGCTGGAGATTTCGTGACCTGTTTTCACAACACAATTTCACCATCACATCCTGTATATAAATTGATGTTACCACATTTCATCTTCTTGCTTAATATCAACACGGATGGAATGCCAGTCCTTACCGCTGAAAATGGTGCATTCAACAAAATTCTCGTCTTTGGTCTCGAAAATTGCTACGATCTCATGCTGAAAAAGTACAAATCATTCAGTTTGAAAGATCAAGGCTGGTTAGAAAATGACATCGAGAATCGAGGAGTGAAAAATCTTCCAAATTATCATTATTACGAAGACGCAAAACCAATGTTCGAAGCGATCCATAATTACATTCAGCAATGTATCAAAACTATCTATGGCGAAGACAAGAACGTGGAGGAAGATTTCGAATTGCAAAATTTCGCTCAACTTCTTTGTGACCCTAAAGAAGGAATGAAGGGTGTTTGGGGCAATGGCCAATTCACGACGATAGAAGATTTAACCAAGACCTTAAGCACGCTGGTTTTCATCTTGACAAATGTTCACGCAGCCGCAAATTTCAACCAATACGATGAATATGCTTATCCACCGAACTTCCCTTTCCGCCTCAAAGGTTCTCCACCTACAAATAAGGATTCAATCAGCGAAGAGGACTTGGTCAAATTGTTTGACGTCAATATCACTTTGGACACTATGGAACTTGGACGAACATTAAGTTTACAAGGAACCAACAAAATCGGAAATTATGAAACAAATTACGAATTCAAACCTGAAATATTGGAACACTATCTTGGATTCATAAATGCTCTGTCAAAGATTCAAACAGACAATGATGAGAAGAACTTGAGAAGAAGAAATCCTTACCCATGGCTATCACCAAGAGTTGTTCCTAATTCAATCAGTATTTGA

Transcript

Protein

Uniprot

Uniprot term	Description
O16025	Allene oxide synthase-lipoxygenase protein OS=Plexaura homomalla OX=47982 PE=1 SV=1
O75342	Arachidonate 12-lipoxygenase, 12R-type OS=Homo sapiens OX=9606 GN=ALOX12B PE=1 SV=1
O70582	Arachidonate 12-lipoxygenase, 12R-type OS=Mus musculus OX=10090 GN=Alox12b PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00305	Lipoxygenase	Lipoxygenase	Domain	Interproscan
PF01477	PLAT	PLAT/LH2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013819	Domain	Lipoxygenase, C-terminal	Interproscan
IPR001024	Domain	PLAT/LH2 domain	Interproscan
IPR036392	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan
IPR036226	Homologous_superfamily	Lipoxigenase, C-terminal domain superfamily	Interproscan
IPR020834	Conserved_site	Lipoxygenase, conserved site	Interproscan
IPR000907	Family	Lipoxygenase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11771	LIPOXYGENASE	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016702	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan
GO:0046872	Molecular Function	metal ion binding	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0034440	Biological Process	lipid oxidation	Interproscan