Gene detail

Detailed information of XP_066923231.1 in Clytia hemisphaerica

Genomic Location: NW_027103968.1:2264544...2281746
NR annotation: CEG06180.1, T-box transcription factor 2-3, partial [Clytia hemisphaerica]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066923231.1

ATGGAGCCCAACTATGGTGAGAATTTCGAACAACAACAAAATAAATTTGAAGAAAAGAAAATCGGACCTACTACAGAACTACAAGATGATCCTTCCAAGGAGGAATACTACATCCCACCACCACCACCACCACCACCATCAACGACCCCTACTACAGGCCAGTACCAACTGAATGTGATACAGTCATCAGGAAGCCTCCCACAGCCCGTTCCGCCCACGCAACAGACCCATCCTGAATGCTCGCCTCCACCTCAAAATCTATGGAACCAACCGTCAAACAACTCCATCCCAAACTATTCTTATTATCCACCTACTGCACCATCTTTTTACTCGGCACCTGGCACTGGACCTGCGACTCAAGACCTACCACCGCCACCGCAGTTCAATAACCAATCATCAGAATATAACATGTATTATCCAGCTTTGTCGCCATCAACTGGACCTTCAACTTTCGGCCCCGGCGGTGCAATGCCACCAGCACAATATTTAGATTACGGTAAACACTGCAATGTTGACGATGATGATGAGAATCGACCTGTGGTGACGTTGGAGAATAAATCTTTATGGCAAGAATTTCATGAAGTTGGTACAGAAATGATCATCACTAAAACTGGAAGGAGAATGTTTCCACCAATAAAGTTCCGCATATCAAACCTGGAACCTAAAACTAAATATATACTCATCATGGATATAATTCCTGCAGACGATTGTCGTTATAAATTCAGCAGGGGAGCGTGGCTTATCGCCGGAAAAGCCGACCCACCAATGCCTAAACGGATGTTCATTCATCCGGACGGACCGAACACCGGGAATCAGTGGATGTCGAAAAGTATTTCATTCAATAAAATGAAAGTCACCAATTGTGTTCAAGGAAAGAATGGATATCCTATTTTGAATTCCATGCATAAATATCAACCTCGTTTCCATATCGCGAAAGTTGCAGACTTCTATAAAATGAACATGTCCAATCTGAAGACCTTTGTTTTCCGAGAAACCGAATTTTTGGCTGTCACCGCCTACCAAAATGAAAAGGTGACAAAACTGAAGATCAAATACAATCCATTCGCCAAAGGTTTCCGTGAGGATGGAGCTGCTGGTAAACGTATTTCAAGAATCGAGAATAACGAGAGTGATGGTGAAGAAGAAAAATCAAGTTCGCATCAAAACAAGAAAACCAAATTCTCACCAACACCCAATGAATTGAAAGGAAAACACAAATTAGACGAATCACCAGAATCAGGAATTTCCAGTTTAAATTCCACTCCAAGCAAGATGCGTTTCAAAGATACTATTTCACCTCCAACACATATATCGTCTTACGAAAGTCACATCAAATCACGACGTTTCCTTTCCCCGACAGCCATGTTTACTTCATCACGTGATCAATTCTTCTCGTCACGTGATTTTTCACCACGTGACGAGTTCCGATATCATTATAACCCGGTCGCATCGCCTTCCCCATCCCCGAGTTTCGAAAATTATCTCCCACAAAACACTTCAGCGAATTCAGTATTACCAATGGTCCTACCCGGATCTATTTATTCGTCCGGAAATCCTCAAAATACAGTGAATACACCCGGTACTGAATATAATAACGGGGCGAGTTTCCACGATCACGTAGGAGCAGGACAATCGCTTAAAAAACAATTACAACTCAATACGGAACTTTTATCGAGTACTTCTTCTCAATGGCAGAATTTTGGCAGTTATACCACACCAACTACCAATGTCGGATCACCTTATACACAAAACAATTATTTTTCATCGACCCCCAATTACGGACGGTATGGAAGCACCCCTCTTTGTAGACACGGGCTGGCGCATTGTGCAGTTTGCTCATATAGTAGCTCTATTTTAAATTCAGCTAATTTAAAAAATAAAGGATTTGTACCAAGTAAAGACATTGTGAAACCTGATGTCATGGAGAATGATGGTGGAAACCAAAAGATAGAAGGAGCAGAAAAAGTCGATGGTCGTCCTGGAAAAAAGAATAGCAAATCATCGAATACTGGAAACAAAGAAAATGACAACATCTTGAAAGCTGTTCGTGAATCCACTGATCCCGACTCTTACCCAAACAAACTCCCCGGTTATTTCCTTTTAATCAACAACGAAAATTTTTTGGAAATGGACAAACGAACTGGCACAGATATAGACGCAAGGAGTATAACAGTTTTATTCCAAGATATGGGTTTTACTATAGAAGAGCACAAAGATTTGTTATCTTATAAAATGAGACAAGTTTTGCAAGAAGCAGGCGAAAGGAGTTATGCGAAATATTCCTGTCTTATCATTTGCATTTTAAGTCATGGCAAGGAAGGTGAAATATATGCTGTTGATGAAACAATTCCTGTTAAAGAGATAACACTGTGTTTTCATGGATCAAACCTAGCTGGGAAACCGAAGATCTTCCTTCTCCAAGCTTGCCAAGGTATATCTCTTTGCCTGTTATTTATTTTCTCCTTATTGAATAATTAA

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
Q60707	T-box transcription factor TBX2 OS=Mus musculus OX=10090 GN=Tbx2 PE=1 SV=3
Q863A2	T-box transcription factor TBX2 OS=Canis lupus familiaris OX=9615 GN=TBX2 PE=3 SV=2
Q13207	T-box transcription factor TBX2 OS=Homo sapiens OX=9606 GN=TBX2 PE=1 SV=3

Gene family	Subfamily
Transcription Factors Family	T-box

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00656	Peptidase_C14	Caspase domain	Domain	Interproscan
PF00907	T-box	T-box	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033139	Active_site	Peptidase family C14A, cysteine active site	Interproscan
IPR046360	Domain	T-box transcription factor, DNA-binding domain	Interproscan
IPR001309	Domain	Peptidase C14, p20 domain	Interproscan
IPR036960	Homologous_superfamily	T-box superfamily	Interproscan
IPR015917	Domain	Peptidase C14A, caspase catalytic domain	Interproscan
IPR008967	Homologous_superfamily	p53-like transcription factor, DNA-binding domain superfamily	Interproscan
IPR011600	Domain	Peptidase C14, caspase domain	Interproscan
IPR018186	Conserved_site	Transcription factor, T-box, conserved site	Interproscan
IPR029030	Homologous_superfamily	Caspase-like domain superfamily	Interproscan
IPR001699	Family	T-box transcription factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11267	T-BOX PROTEIN-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003700	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0045893	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0004197	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0006508	Biological Process	proteolysis	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0008234	Molecular Function	cysteine-type peptidase activity	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0001708	Biological Process	cell fate specification	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K10176	TBX2; T-box protein 2	-	Transcription factors	ko03000	deepkoala