Gene detail

Detailed information of XP_066923614.1 in Clytia hemisphaerica

Genomic Location: NW_027103979.1:1071803...1086050
NR annotation: XP_002166232.2, RNA-binding protein 28 [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066923614.1

ATGGCGAAGGGAAAACACGAGGGTGAAAACCCAGCACCTCGAAAAACAATTTTTGTGCGAAATCTACCTTTCACTACCACAAATAAAGAGTTGGAAGAACTATTTTCAAATGATGCTCCCGTTAAGCAAGCATTTGTTGTCAAAGACAAAGATAACAGAACTAAATGTCGTGGATTTGGTTATGTACAATTTGTGGTTCAGGAGGATGCAGATAAAGCTGTCGCAACTAGCAAAACTGTCGCTAATCGGAAACTTCTCATATGTTATGCTAACAAGAAACCAAAGCATGAAAAGAGAAAGAAAGAACAAGCTGCTGCAGCTGAAAAAGAAGGTGGTGAAAAAGACGACGTCAATGAAAAGGAAGAGGAGACTGATACAAAGAAACAGACTGTGGACCAACAAAAAGAAAAATCCACCAAAGATAAAAAGAAACCCAAAGAAGTTGAAAAGGCAAAAGGAAGTCAAAATACAGAAAAAGCTCAGAATGATGAGAAAGAGGTCAAAAAGAATGAAAAGCCAACTGAGAAATATACCAAACCAAGTGTGACTGATTCTAAGACTGAACTACAAAGAACTATAGTATTGACTGGATTGACTGATAAGGTTAAGAGAAAAGCATTTCGTGTATTATGTGAAAGTTTTGGTGAAGTTGAGAATATTGTGTTTCCTGTACCTGAGCGAACGCAGGTCACTGCTTTCGTACGTTTCAAAGATTACAAAGCAACAATTCGAGCACTACAGAAAATCCCAGGGAAGAAGGTCAAGAAATCACATTCTTTATCAGCGGTTTTATTAACGAAAGAAGGGAAATTCCCTAAAAAGAAGACTCTTGATAAATCACGTTTGATTGTACGTAATTTAAGTTTCAAAGTTGAACTTGATGAACTGAAAGAATGCTTTTCCAAATTCGGTAAAGTCCTTGATGTTAATATCCCAACCAAGACTGTCAATAATAAGGAAGTGAAGATTGGTTGTGGTTTTGTACAATTTGAGAATCCTTCTCAAGGACTGGCTGCGCTTGAAGCTATGAATATGAAAGAAATCAACGGACGTGCTGTCATTGTTGATTGGGCTGTTAAGAAAGATGCTTATGAGAAAGATAAAGATTCTAAAGCAATCAATGACGAACCCAAACAAGAAAAAACTGACAAGAAAGGAAAGAAAGTAAAGGAGGAAGAAATGAGCGAAGATGAAGATGCTGATGATGTTGAAGAGGAGGAAGAGAAAGATGAAGAGGACGCCGAAGACCTTTCAGATGAAGAAGCTGACGATGATGAGTTATCTGTTGATGAAGAAGTTGAAGAAGAAGAAGCGAGTGAAAATGAAGATTCAGGTGTCGAAAAAGATGAACCAATGAGCGAAGACGAAGAAGGATCAGACATTGATGAAGAAGACGAACTTGAAGAGATGAGTGAAGATGAAGGCGAAGAGGAGAGTGACGAAGATGATGAAGAAGATGAAGCGAAACAAGCACGAATCAAAGAAAAAATGAGAGACGCGAAAGAAGGCAAGACCGTCTTCATCCGAAACATGTCTTACAATACTGATGATGAAGGTTTGATGGAAGAATTCGAGAAATTTGGCGAGATTGATTACTGTAAAATTGTGATGGATCGTGAAACTGGTCATAGCAAAGGATGCGCTTTCCTCAAATTCAAAGAGAAAGACGCCGCAGACGAATGCATTAAAGAGATGGAAAAATTGCAAGATCAGCAGAAAAATCTAGTCGTAGACGGCCGATCTATTGTTGTTTCTAAGGCTGTCACTAAAGGCAAGATGGGAGAGTTGGAGCGACAGAAAGCTGCAGAAAAACAGGAGACGGACAAGAGAAATTTGTACTTGGCTTATGAAGGCGTGATTACGAGAAAAACGCCGGGTGCGGAGGACCTACCTGAAGCTTATATGAAGTTGAGAGAGAAGACATTGGCTGAAAAGAAAAAGAAACTGACCAACCCACAATACTTCATCTCGCGTACCAGACTTTGTGTACGAAACATCCCGCTAAACCTAAGCAGCGACGAACTGAAAACGGAGCTGAAGAAGTTCTCTGAACTCAAAGAGATGAAGATATTCGATGCGAAAATCATGCGTAGTAAAGACCGAAAAGACGGCCAAGGAGCTTTCCGATCGATGGGTTACGGCTTTTTAGATATCGACACGCACGAGAACGCTTTGAAGCTGTTACGAGCTGTTAACAATAATCCAGATATTTTCGGTGAAAACCGTCGTCCGATCGTTGAATTTTCAGTTGAAAACACGAAAGCGTTGAAGATTCTCGATTTGAAAAAACAGAAACTAGAACAAATGAAAGCTGAGAAGGAGAACAATGAAACTGATGGCATGTCAGAGGAACAAAAGAAAGACTTTGATCTTGAGAAGCATCGCGAATACAAATCCAAAGCTACCGATAAACGACAGAAAAGAAAACTTCGCTATCAAAGACGTCGAAAAGAGAAACAACGTCTTCGAACAGAGGCTGAAACAAATGGTCAAACGCCTGAAGGGAAAACACAAAAGGTTGAAAGTAAACCCCAAAATTCGCAAGGAAATCGTAATGAAGCGTCAACCAAAAAGTCTAAAAAGAGTAAACCTGAAGGCGGTAAAGCAAAGAAGCAAATCGAAGATTCTCAACCTGAGGCCAAACAACAGAAAACTCAAGAAGAAACTCCCCGAAAACGTAAGAAAACCAAGGAAAACGAAAGTGCCGTAAACATAGAAGAAAATAGTGGCGAAAACGCCACAAAGAGAAGTCGTAAATCGAACACTCTATCCAAACAAAAAGAAGAAAGCAAATTTAATGACTTGGTTGAACGACATAAGAATAAACTGAACAATGTACTCTCCGGTAAAAGTGAGCAGAAAAAGTCTGGAGATCGTTGGTTTGAGTAG

Transcript

Protein

Uniprot

Uniprot term	Description
Q9NW13	RNA-binding protein 28 OS=Homo sapiens OX=9606 GN=RBM28 PE=1 SV=3
Q8CGC6	RNA-binding protein 28 OS=Mus musculus OX=10090 GN=Rbm28 PE=1 SV=4
Q9SVM8	Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBG2 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051945	Family	RRM MRD1 RNA Processing and Ribosome Biogenesis	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR003954	Domain	RNA recognition motif domain, eukaryote	Interproscan
IPR000504	Domain	RNA recognition motif domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR48039	RNA-BINDING MOTIF PROTEIN 14B	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003729	Molecular Function	mRNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K14573	NOP4, RBM28; nucleolar protein 4	-	Ribosome biogenesis	ko03009	deepkoala