Gene detail

Detailed information of XP_066924351.1 in Clytia hemisphaerica

Genomic Location: NW_027104027.1:208003...218968
NR annotation: XP_012564505.2, AT-rich interactive domain-containing protein 5B [Hydra vulgaris]

Gene Structure

More details in Jbrowse

Sequence

CDS

XP_066924351.1

ATGGAAGTCAGGCTGGGAGATAAGACATTAGGACAACATGGCTCAAACATTTACTACAAAGAATTTTTTGTTACATCAAATTCTGGGGTTAGACATTATCGTCCTGGCAGATTTTATTTTGTTCAGAAATCCAAGAGGTTTGAAATTGCCATTGCAGAATTTCAGTTGATTTGGCATAATTTGAAGGACAGTAAAAACTATGCCTCCGTGAAACTCTATTTCAAACCTGAAAAAGATTTTGATGATGATGAAGAAGAAGCACATGGAATGGATGAAGTTGTGGAAGCTAGCCGTCAAGTTGTTGTGGAATGTTCCAAATTTGCTGCTTGGGAGTGTACATCAAAGAGTTGGCATCAAAGCTATGGGACCACTCTGTATGATGGAGTTGAAGTGGACAAGTTAAAAGCTCTCAGTAAAAATCAACAGAAAATCATACATAGAAATGATAACTCTCTCCGAAAAGTGAAAATTTTGAATTTCCCGCAGTACAACCGGTACAAAACATGCATCAAAATGCTCAATCTTGGTGTTCCGATGACTTACTTTCAGCTTTTAGCCAGGGGTGGTTTGGACATCAAGAATTTGAACACTTTGATTTTATTTTCTAAGAAACAATTTGAGAAAGAGGACGTGGAAGACTACTCGCCAACACTAGACGTACCAGTTCCCGTATTCAAAGGTCGACCTCGAAAGCGGAAAAATATTCAAAACCCTTTCTCGAACGATGACGCCGTCACAAACAAAAAGATCAAGACAATCGACATCAAATCAAACTCTACGAAACAACCGACTCAAATCAAAATTGACCATAAAACGAATGGTAGAATCGGTCCTATTCTGAACAAACCGATTGAAATTCATCCGCCACCTCCTGTCAAAAGAGTGGTACTTGATCTTCCGAAACCTGAGCCTCCTCCTGGGCGAGGCGTACGTGGGAGAGATACGATTTGTCATGAAAAAAGAGAATACACATTAAAGGATAAAGAGGAACACCATCGATTCTCAGAAGATTTGCATCGTTACATGTTGAACAATGGAACACCGATTCTCAAGATACCACGTATCGGCTGTGCGCCAGTCAACCCATTGGTTTTGTACAGAGCTGTCATGGATAGAGGCGGATTTGCACAGGTAACATTACATCGTAATTGGCGAGACGTATACGATTGTTTGGGCCATTCCACTATGATCACAAACGCTGCTACTGCTACAAGGAAGCTCTATGAACGAATGTTGCTTCCCTACGAGAACCACATGCGTAGTAACCCTGGGAACCCTGGGAAAAGAATCAGTGACAAACGCGCTCACCAAGCCACCCTACCAAAATTCAGTTCCAATGATCTTATACGACCTCGAGAACATTTTGAACACAAGAATCCTGAGCAACAGACACACAGACAACAGCAACAACCTATCGTTATCGCACCAAAAGTCCCGCATGTTAATAGTATGCCACAAAACGCAGTTAACAGTGCGGAAAATCTCTCTATTTCCTTAATGATGTCCAAACAACGTGGTCGCCCGTCTAAGAAATTCCGTAACCAAATCGAAAAATTACGGTCTCGTCAAACGATGCAACTCAACGAAGAACAGCAACACGCCCCGATGTTTGCAGGTAAAACCGCGCGCCTACCACCCCGCAAACAACCCTGGGTTAATGAACTTAACGTTGATATTGCTTCGCGTCAGCACACGGAAGTGCCAATGTCTTCAAACCCCGCATTTCGCAATAAAGATAAAGAAAGGCGGTTAAGTGATAGCTCAGATATAGAGCTTATTTCTCCGCGTCGGGGCACGGAGATCCACTCGCCGCTTCGCCAGGGACGCCGAATATACCCTTCAACTAAAGATTCAGTGGGTACCTCGTCAAGTGGAACGAACGGGTTTGTTCCGGACGCTTTTGTATCAAATGTACACAACTCTACGGATAAAGAGCAGCCTAATTCACAGAAAAAAGGTCAATGCGAGTTCAAAATTCAATCAGTGCGTAGCTTAGCAACAGTTGACGAAAACAAGCCTTCATCTTCACAGCAACCGAATGAAGCAGCCTCTTCAGGCACCACCCAGTATGTTCATTATCCTTACAGTACAACGAACACTTATGAATATATTCCAACCAAATTCTATTCTCTAAGTGGTTCCAATAAACTGGTACCCATTAACGCTCTACCTGTTGGAAACTCGGGAAAACAACCTACTCAGAAAGCAATGTTCCGCGATGCTGGATTTTCGATGCGGACTTTTCGACACGATCAATCTGCAGACAACACTTCGTACAAAATCAAATCGACTGCTCTTAAAAATCACGAACCTTACATAATACATCACCCTTCGCATTTGAATAGAGGTTACCGTGAAATTCCGGGACAATATCCAGTTATTTACACGCATCAGCCGGGTGTGAGAACCACTGGGAAAAGTGAGCGCTCTACAAATTACGTAAGGCAAGATATGCGGTACGTCACGAGTGCTCCCGTTGACTATAGCCCACCAAATGGTACTATTGTTTACGGTCGTGTGCAACCGCGCTACGAAAAAATCTCCCCACGTAGTTCCGGGACAACGTCGACGCGTGGGCGAGGGCGTGGACGTGGACGACCGCCGTCACGCCCATCTTCGTCTACAACTTACGTTAAATACATCGATCCGCCGGCACAATCAGTTCAAAAGTGGCCTGCTGGTACAGAGCTATTGAAAGTTAAAGCCCATGTTAATATGTGA

Transcript

Protein

Uniprot

Gene family

Uniprot term	Description
E7F888	AT-rich interactive domain-containing protein 5B OS=Danio rerio OX=7955 GN=arid5b PE=3 SV=1

Gene family	Subfamily
Transcription Factors Family	ARID

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01388	ARID	ARID/BRIGHT DNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036431	Homologous_superfamily	ARID DNA-binding domain superfamily	Interproscan
IPR001606	Domain	ARID DNA-binding domain	Interproscan
IPR051232	Family	AT-rich Interactive Domain/SWI1 Chromatin Remodeling	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13964	RBP-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003677	Molecular Function	DNA binding	Interproscan
GO:0000976	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan